View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_24 (Length: 229)
Name: NF7461_1D_low_24
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 28810565 - 28810385
Alignment:
| Q |
40 |
tcattttttgaaaaatcatttcttttcaaaacattcaactaaagtagtttactattcaccagatnnnnnnnngtgaaatagaagtttcattaatcacgcc |
139 |
Q |
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| T |
28810565 |
tcattttttgaaaaataatttcttttaaaaactttgaactcaagtagtttactattcacc-gataaaaa---gtgaaatagaagtttcattaatcacgcc |
28810470 |
T |
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| Q |
140 |
tttaactcattagcatcattgatataaaatcctccagctgctccatcatttgaaaccaataaagaagttgattaacttgcatgtt |
224 |
Q |
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| T |
28810469 |
tttaactcattagcatcattgatataaaatcctccagctgctccatcatttgaaaccaataaagaagttgattaacttgcatgtt |
28810385 |
T |
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