View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_28 (Length: 215)
Name: NF7461_1D_low_28
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 11909882 - 11910038
Alignment:
| Q |
1 |
caatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggagagatttggagc |
100 |
Q |
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| T |
11909882 |
caatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggagagatttggagc |
11909981 |
T |
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| Q |
101 |
ttgagttcaagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
158 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
11909982 |
ttgagttcaagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11910038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 11918068 - 11917912
Alignment:
| Q |
1 |
caatcgtctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacaaagataagatcatcaatttcaactattggagagatttggagc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11918068 |
caatcatctaatgttttttcttaagttaagaaacatgaaataaagagagaggtgaacagagataagatcatcaatttcaactattggagagatttggagc |
11917969 |
T |
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| Q |
101 |
ttgagttcaagcttatggatgcttctggaacaacattcatctcttcttcttttagtta |
158 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
11917968 |
ttgagttcaagcttatggatgcttctcgaacaacattcatctcttctt-ttttagtta |
11917912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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