View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_3 (Length: 424)
Name: NF7461_1D_low_3
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 11901876 - 11902263
Alignment:
| Q |
17 |
tagatggagagaacatgacttgttctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901876 |
tagatggagagaacatgacttgttctagatgcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttg |
11901975 |
T |
|
| Q |
117 |
tttcttgctggccacaaagagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaaga |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901976 |
tttcttgctggccacaaagagtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaaga |
11902075 |
T |
|
| Q |
217 |
tggttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatgg |
316 |
Q |
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| T |
11902076 |
tggttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatgg |
11902175 |
T |
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| Q |
317 |
aactaggtagcttttctatgttgttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
404 |
Q |
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| T |
11902176 |
aactaggtagcttttctatgttgttatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
11902263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 11860676 - 11860312
Alignment:
| Q |
19 |
gatggagagaacatgacttgttctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtt |
118 |
Q |
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| T |
11860676 |
gatggagagaacttgacttgttcaagatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtt |
11860580 |
T |
|
| Q |
119 |
tcttgctggccacaaagagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatg |
218 |
Q |
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|||||||||| || || |||| ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| |
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| T |
11860579 |
tcttgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatg |
11860480 |
T |
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| Q |
219 |
gttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaa |
318 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| || |
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| T |
11860479 |
attgaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaa |
11860380 |
T |
|
| Q |
319 |
ctaggtagcttttctatgttgttatgggaaagatctagatacctcaagtacttcacctcctcaataga |
386 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11860379 |
ctaggaagcttctctatgttgttatgggaaagatctagatacctcaagtacttcacatcctcaataga |
11860312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 386
Target Start/End: Complemental strand, 12039435 - 12039077
Alignment:
| Q |
25 |
gagaacatgacttgttctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgc |
124 |
Q |
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|||||| |||||||||| |||||||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| || | | | |||||||| |
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| T |
12039435 |
gagaacttgacttgttccagatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaa---cgtatttcttgc |
12039339 |
T |
|
| Q |
125 |
tggccacaaagagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgag |
224 |
Q |
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| T |
12039338 |
tagctacaaagagtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgag |
12039239 |
T |
|
| Q |
225 |
gcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggt |
324 |
Q |
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|||||||| |||||| ||||||||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
12039238 |
gcaactcaaatcatccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactagga |
12039139 |
T |
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| Q |
325 |
agcttttctatgttgttatgggaaagatctagatacctcaagtacttcacctcctcaataga |
386 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
12039138 |
agcttctctatgttgttatgagaaagatctagatacctcaagtacttcacctcttcaataga |
12039077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 11828541 - 11828168
Alignment:
| Q |
19 |
gatggagagaacatgacttgttctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtt |
118 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| ||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||| |
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| T |
11828541 |
gatggagagaacttgatttgttccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtt |
11828445 |
T |
|
| Q |
119 |
tcttgctggccacaaagagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatg |
218 |
Q |
| |
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|||||||||| || || |||| ||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| || | ||||||||| |
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| T |
11828444 |
tcttgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatg |
11828345 |
T |
|
| Q |
219 |
gttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaa |
318 |
Q |
| |
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||| |||||||||| |||||| ||||||||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| || |
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| T |
11828344 |
gttaaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaa |
11828245 |
T |
|
| Q |
319 |
ctaggtagcttttctatgttgttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaac |
395 |
Q |
| |
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||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
11828244 |
ctaggaagcttctccatgttgttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaac |
11828168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 85 - 401
Target Start/End: Complemental strand, 11732258 - 11731942
Alignment:
| Q |
85 |
gtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgt |
184 |
Q |
| |
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|||||||| ||||||||||| ||| | ||||||||||||||||| || |||| |||||||||||| |||||||| |||| ||| || ||||||||| |
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| T |
11732258 |
gtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgt |
11732159 |
T |
|
| Q |
185 |
gagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataattt |
284 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||| |||||| | |||| | | |||||||||||||||||||||||||| ||||| | || | ||| |
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| T |
11732158 |
gagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagttt |
11732059 |
T |
|
| Q |
285 |
caatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttatgggaaagatctagatacctcaagtacttcacctcctcaata |
384 |
Q |
| |
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||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||| |||| |||||||||| |
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| T |
11732058 |
caaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaata |
11731959 |
T |
|
| Q |
385 |
gatgttggaaccatctt |
401 |
Q |
| |
|
|| ||||| || ||||| |
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|
| T |
11731958 |
gaggttggtacaatctt |
11731942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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