View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_33 (Length: 203)
Name: NF7461_1D_low_33
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 11902095 - 11902263
Alignment:
| Q |
15 |
catccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctat |
114 |
Q |
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| T |
11902095 |
catccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctat |
11902194 |
T |
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| Q |
115 |
gttgttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
183 |
Q |
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| T |
11902195 |
gttgttatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaat |
11902263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 11860460 - 11860312
Alignment:
| Q |
17 |
tccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgt |
116 |
Q |
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|||| ||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||| |
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| T |
11860460 |
tccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgt |
11860361 |
T |
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| Q |
117 |
tgttatgggaaagatctagatacctcaagtacttcacctcctcaataga |
165 |
Q |
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| T |
11860360 |
tgttatgggaaagatctagatacctcaagtacttcacatcctcaataga |
11860312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 12039227 - 12039077
Alignment:
| Q |
15 |
catccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctat |
114 |
Q |
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| T |
12039227 |
catccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctat |
12039128 |
T |
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| Q |
115 |
gttgttatgggaaagatctagatacctcaagtacttcacctcctcaataga |
165 |
Q |
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| T |
12039127 |
gttgttatgagaaagatctagatacctcaagtacttcacctcttcaataga |
12039077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 11828327 - 11828168
Alignment:
| Q |
15 |
catccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctat |
114 |
Q |
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|||||| ||||||||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || || |
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| T |
11828327 |
catccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccat |
11828228 |
T |
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| Q |
115 |
gttgttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaac |
174 |
Q |
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| T |
11828227 |
gttgttatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaac |
11828168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 11732103 - 11731942
Alignment:
| Q |
19 |
caagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttg |
118 |
Q |
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|||||||||||||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
11732103 |
caagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctatgttg |
11732004 |
T |
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| Q |
119 |
ttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatctt |
180 |
Q |
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|| ||||| ||||||||| |||||||||| |||| |||||||||||| ||||| || ||||| |
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| T |
11732003 |
ttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatctt |
11731942 |
T |
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