View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_4 (Length: 415)
Name: NF7461_1D_low_4
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 35071744 - 35072153
Alignment:
| Q |
12 |
tttccttatcactaacatacaaaaacaaatagccaaaatggaacatttttggattcaaatttcaa---------------cttttcataattactctcac |
96 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
35071744 |
tttcctaatcactaacatacaaaaacaaatagccaaaatggaacatttttggattcaaatttcaatccacacgaacagaactgttcattattactctcac |
35071843 |
T |
|
| Q |
97 |
tgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatcca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071844 |
tgtgaactctgattggtcaaacgatcagggttggtaacctcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatcca |
35071943 |
T |
|
| Q |
197 |
atttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071944 |
atttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcct |
35072043 |
T |
|
| Q |
297 |
ctctcctgttatctgaagcactcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctgga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072044 |
ctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctgga |
35072143 |
T |
|
| Q |
397 |
gtttccttcc |
406 |
Q |
| |
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|||||||||| |
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|
| T |
35072144 |
gtttccttcc |
35072153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 406
Target Start/End: Original strand, 35072805 - 35072993
Alignment:
| Q |
218 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
317 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
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|
| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
|
| Q |
318 |
tcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
406 |
Q |
| |
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|| ||||||||| ||||||||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||| |
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| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcc |
35072993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 406
Target Start/End: Complemental strand, 35107055 - 35106867
Alignment:
| Q |
218 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
317 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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|
| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
|
| Q |
318 |
tcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
406 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||| |
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| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcc |
35106867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 36296653 - 36296766
Alignment:
| Q |
293 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
392 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| |||||||||||||| || || ||||| || || | ||||||||| || || || ||||| |
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| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
|
| Q |
393 |
tggagtttccttcc |
406 |
Q |
| |
|
||| || ||||||| |
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|
| T |
36296753 |
tggggtctccttcc |
36296766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 406
Target Start/End: Original strand, 24040861 - 24041049
Alignment:
| Q |
218 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
317 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
|
| Q |
318 |
tcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
406 |
Q |
| |
|
|| ||||||||| |||||||||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||||| |
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|
| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttcc |
24041049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 24014379 - 24014492
Alignment:
| Q |
293 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
392 |
Q |
| |
|
|||||||||| |||||||||| || || || |||||| ||||||||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
393 |
tggagtttccttcc |
406 |
Q |
| |
|
||| || ||||||| |
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| T |
24014479 |
tggggtctccttcc |
24014492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
323 |
catcttcaacctcaaccttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
404 |
Q |
| |
|
||||||||| ||||||||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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|
| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
136 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
201 |
Q |
| |
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||||||||||| ||||||||||||||||| |||| || ||| ||| ||||||||||||| |||| |
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|
| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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