View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_1D_low_5 (Length: 412)
Name: NF7461_1D_low_5
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_1D_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 96 - 412
Target Start/End: Original strand, 11909032 - 11909348
Alignment:
| Q |
96 |
gctacatgtgtgtgaacactacaaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggca |
195 |
Q |
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| T |
11909032 |
gctacatgtgtgtgaacactacaaatgcctaactccttagtaattttctgatttatggtgatgcatataagaaacggtaggaggcagaaatgatcaggca |
11909131 |
T |
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| Q |
196 |
attgctgaagccttggcagcgatggcatccaaatcagcagggaagtaacgatgagttccgagcactgggaagatttcaaggggaggtacgatcctcgagg |
295 |
Q |
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| T |
11909132 |
attgctgaagccttgccagcgatggcatccaaatcagcagggaagtaacgacgagttccgagcaccgtgaagatttcaaggggaggtacgatcctcgagg |
11909231 |
T |
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| Q |
296 |
tgctcagatttggatccaagcgattgagaagatttacataatgatgatgttccctgatgcatataaggtgttgttccagacttacatgctggctaaagaa |
395 |
Q |
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| T |
11909232 |
tgctcagatttggatccaagcgattgagaagatttacataatgatgatgttccctgatgcatataaggtgttgttcgagacttacatgctggctaaagaa |
11909331 |
T |
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| Q |
396 |
gctgaatattggcgaga |
412 |
Q |
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| T |
11909332 |
gctgaatattggcgaga |
11909348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 11918597 - 11918485
Alignment:
| Q |
300 |
cagatttggatccaagcgattgagaagatttacataatgatgatgttccctgatgcatataaggtgttgttccagacttacatgctggctaaagaagctg |
399 |
Q |
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| T |
11918597 |
cagatttggatccaagcgattgagaagatttacataatgatgatgttccctgatgcatataaggtgttgttcgagacttacatgctggctaaagaagctg |
11918498 |
T |
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| Q |
400 |
aatattggcgaga |
412 |
Q |
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| T |
11918497 |
aatattggcgaga |
11918485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 11777347 - 11777447
Alignment:
| Q |
118 |
aaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggcaattgctgaagccttggcagcga |
217 |
Q |
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| T |
11777347 |
aaatgcctaactcttaaataattgtctgattct-ggtgatgcagataagaaaaggttagaggtagaaatgatcaggcaattaccgaagcctttgtagcga |
11777445 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
11777446 |
tg |
11777447 |
T |
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