View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_1D_low_7 (Length: 368)

Name: NF7461_1D_low_7
Description: NF7461_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_1D_low_7
NF7461_1D_low_7
[»] chr6 (16 HSPs)
chr6 (143-363)||(33414524-33414744)
chr6 (210-363)||(31564964-31565117)
chr6 (143-294)||(33269497-33269648)
chr6 (143-314)||(33383981-33384156)
chr6 (143-363)||(33395008-33395230)
chr6 (180-363)||(33258187-33258372)
chr6 (17-78)||(31565162-31565223)
chr6 (154-244)||(33292988-33293078)
chr6 (237-333)||(33278972-33279068)
chr6 (21-78)||(33414402-33414459)
chr6 (17-78)||(33292851-33292912)
chr6 (21-74)||(33269374-33269427)
chr6 (240-363)||(33280358-33280481)
chr6 (17-78)||(33383855-33383916)
chr6 (303-363)||(33293090-33293150)
chr6 (17-52)||(31567428-31567463)
[»] chr2 (3 HSPs)
chr2 (186-363)||(17447805-17447982)
chr2 (17-78)||(17445747-17445808)
chr2 (143-215)||(17445607-17445679)
[»] scaffold0428 (3 HSPs)
scaffold0428 (180-363)||(2308-2493)
scaffold0428 (237-333)||(15185-15281)
scaffold0428 (240-363)||(13772-13895)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 143 - 363
Target Start/End: Original strand, 33414524 - 33414744
Alignment:
Q  143 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 242  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  243 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactc 342  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||  ||     
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgcta 33414723  T
Q  343 gtcttccggatttcttttcag 363  Q
    |||||||||||||||| ||||    
T  33414724 gtcttccggatttcttatcag 33414744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 210 - 363
Target Start/End: Complemental strand, 31565117 - 31564964
Alignment:
Q  210 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  310 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttttcag 363  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcag 31564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 143 - 294
Target Start/End: Original strand, 33269497 - 33269648
Alignment:
Q  143 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 242  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  243 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacac 294  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||    
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacac 33269648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  143 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 238  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  239 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 314  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 143 - 363
Target Start/End: Original strand, 33395008 - 33395230
Alignment:
Q  143 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 242  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  243 ttctcacttc--taccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaac 340  Q
     | |||||||  | || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  |    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgc 33395207  T
Q  341 tcgtcttccggatttcttttcag 363  Q
    | | || ||||||||||| ||||    
T  33395208 tagcctaccggatttcttgtcag 33395230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 363
Target Start/End: Original strand, 33258187 - 33258372
Alignment:
Q  180 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 278  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  279 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttttcag 363  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 33258372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 31565223 - 31565162
Alignment:
Q  17 aatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565223 aatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  154 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 244  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 33278972 - 33279068
Alignment:
Q  237 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 333  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 33279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 33414402 - 33414459
Alignment:
Q  21 aaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 78  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414402 aaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 33292851 - 33292912
Alignment:
Q  17 aatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 78  Q
    ||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||    
T  33292851 aatgaaaggctgctctataagagaaagccctcctaacctctttgagattcttccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 33269374 - 33269427
Alignment:
Q  21 aaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 74  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269374 aaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 363
Target Start/End: Original strand, 33280358 - 33280481
Alignment:
Q  240 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 339  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  340 ctcgtcttccggatttcttttcag 363  Q
     |  ||||||||||||||| ||||    
T  33280458 ttaatcttccggatttcttgtcag 33280481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 33383855 - 33383916
Alignment:
Q  17 aatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 78  Q
    |||||||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383855 aatgaaaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 33293090 - 33293150
Alignment:
Q  303 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttttcag 363  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| ||||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcag 33293150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 31567463 - 31567428
Alignment:
Q  17 aatgaaaggctgctctagaagagcaagctctcctaa 52  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31567463 aatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 186 - 363
Target Start/End: Complemental strand, 17447982 - 17447805
Alignment:
Q  186 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 285  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  286 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttttcag 363  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcag 17447805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 17445808 - 17445747
Alignment:
Q  17 aatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445808 aatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  143 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 215  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 363
Target Start/End: Original strand, 2308 - 2493
Alignment:
Q  180 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 278  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  279 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttttcag 363  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcag 2493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 15281 - 15185
Alignment:
Q  237 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttcctt 333  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 363
Target Start/End: Complemental strand, 13895 - 13772
Alignment:
Q  240 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 339  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  340 ctcgtcttccggatttcttttcag 363  Q
     |  ||||||||||||||| ||||    
T  13795 ttaatcttccggatttcttgtcag 13772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University