View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7461_2D_high_1 (Length: 1039)
Name: NF7461_2D_high_1
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 801; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 17 - 924
Target Start/End: Original strand, 6364812 - 6365731
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6364812 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
6364911 |
T |
|
| Q |
117 |
ttcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactttgcctttaccggttttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
6364912 |
ttcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactttgccttttccggttttt |
6365011 |
T |
|
| Q |
217 |
cctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365012 |
cctatacaaaaattggactctcaatttcactgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaat |
6365111 |
T |
|
| Q |
317 |
gttctttatacctactacat-------------ccacttgcccttaattatatcaaattgaaaactaaattttaatattttagtggtaattgatagtaac |
403 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365112 |
gttctttatacctactacataatttctcaacatccacttgcccttaattatatcaaattgaaa-ctaaattttaatattttagtggtaattgatagtaac |
6365210 |
T |
|
| Q |
404 |
tggttatttatgaataatatttgggtattgttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacgg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365211 |
tggttatttatgaataatatttgggtattgttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacgg |
6365310 |
T |
|
| Q |
504 |
cggaacaaggcggtggcagtgtcaagtacagtaccggcaacatcaccagcaaaatcgaagataccgccaaatgcaccaccggcgctttgagctgcagtca |
603 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||| || | ||| | ||||||||||||||||||||||||| | |
|
|
| T |
6365311 |
cggaacaaggaggtggcagtgtcagctacagtaccggcagcatcaccaacaaaatcgaagaaactgtcaactacaccaccggcgctttgagctgcagtga |
6365410 |
T |
|
| Q |
604 |
gttcgttgatgtctaagacattcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365411 |
gttcgttgatgtctaagacattcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa |
6365510 |
T |
|
| Q |
704 |
tgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggt |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6365511 |
tgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggt |
6365610 |
T |
|
| Q |
804 |
tagttcaaaagaaataattgtttattgttcattattatatgttttttacataattaatttactaaataacaacacgtttaaatgaagatgggtaatataa |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6365611 |
tagttcaaaagaaataattgtttattgttcattattatatgttttttacataattaatttactaaataacaacacatttaaatgaagatgggtaatataa |
6365710 |
T |
|
| Q |
904 |
gctggctcattacataaataa |
924 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
6365711 |
gctggcacattacataaataa |
6365731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 6354057 - 6354203
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||| ||||| | |||| || || ||||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
6354057 |
catcttcaagtgtcaaactcacaaggaagaattcacc---ttgcataaaattatcgatgtaaaaagctccgggaattcccatgttactgtcccattcaaa |
6354153 |
T |
|
| Q |
117 |
ttcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
166 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
6354154 |
atgaatactgaaagcattttgtttgtctcccaatgttggtatggaggtaa |
6354203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 622 - 791
Target Start/End: Original strand, 7463096 - 7463269
Alignment:
| Q |
622 |
cattcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatt |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| |||| ||||||| | ||||| |||| |||| |
|
|
| T |
7463096 |
cattcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatatt |
7463195 |
T |
|
| Q |
718 |
acactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttga |
791 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||| |||| |||| |||| |||||||||| |||||||||||| |
|
|
| T |
7463196 |
acactatatttggtaaatgaaagaaatgcctgtgtcttgtaaccatgggggtgcttagtatctatagtagttga |
7463269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 623 - 792
Target Start/End: Original strand, 6355996 - 6356169
Alignment:
| Q |
623 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatta |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | || ||| ||||||| | ||||| |||||||||| |
|
|
| T |
6355996 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
6356095 |
T |
|
| Q |
719 |
cactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
792 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||||||||| |
|
|
| T |
6356096 |
cactatatatggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
6356169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 686 - 792
Target Start/End: Original strand, 6393072 - 6393178
Alignment:
| Q |
686 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagt |
785 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||| |||||||||| ||||||||| | |
|
|
| T |
6393072 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatact |
6393171 |
T |
|
| Q |
786 |
agttgat |
792 |
Q |
| |
|
| ||||| |
|
|
| T |
6393172 |
acttgat |
6393178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 953 - 1024
Target Start/End: Original strand, 6365770 - 6365841
Alignment:
| Q |
953 |
tacgtgcttttgtgtttctgtcacttgagtgcaatatattttgttcgtcatcttgatgcattgttgtttgat |
1024 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6365770 |
tacgtgtttttttgtttctgtcacttgagtgcgatattttttgttcgtcatcttgatgcattgttgtttgat |
6365841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 686 - 792
Target Start/End: Original strand, 6412212 - 6412319
Alignment:
| Q |
686 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaag-gggatgcttagtatttatag |
784 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| | |||||||||||||||||||| |
|
|
| T |
6412212 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatag |
6412311 |
T |
|
| Q |
785 |
tagttgat |
792 |
Q |
| |
|
|| ||||| |
|
|
| T |
6412312 |
tacttgat |
6412319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 7461067 - 7461213
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||| ||||| ||| || ||||||||||||||||||||| |||||||| | ||||||||| ||| |
|
|
| T |
7461067 |
catcttcaagtgtcaaactcacaaggaagaattcacc---ttgcatatagttatcaatataaaaagctcctggaattcccatggtactgtcccattgaaa |
7461163 |
T |
|
| Q |
117 |
ttcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaa |
166 |
Q |
| |
|
| ||||||||||||| ||| || || ||||||||||| | |||||||| |
|
|
| T |
7461164 |
atgaatactgaaagcagattgcttgtcccccaatgttgggagggaggtaa |
7461213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 687 - 792
Target Start/End: Original strand, 6373157 - 6373263
Alignment:
| Q |
687 |
aatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttacca-aggggatgcttagtatttatagt |
785 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| |||| ||||||||||| |||||||||| |
|
|
| T |
6373157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagt |
6373256 |
T |
|
| Q |
786 |
agttgat |
792 |
Q |
| |
|
| ||||| |
|
|
| T |
6373257 |
acttgat |
6373263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 6425602 - 6425754
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||| ||||| | ||||||||||||| || ||||||||| ||||||||||| || |||||||||| |
|
|
| T |
6425602 |
catcttcaagtgtcaaactcacaaggaagaactcatg---ttgcaaaaaattctcaatatagaatgctcctggaattcccatgtcactgccccattcaaa |
6425698 |
T |
|
| Q |
117 |
ttcaatactgaaagcattttgtttatctcccaatgttggcaaggaggtaataacac |
172 |
Q |
| |
|
| || |||| |||||||||| || ||||| |||||||| | |||||||||||||| |
|
|
| T |
6425699 |
atgaacactgtaagcattttgcttgtctcctaatgttggtatggaggtaataacac |
6425754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 6392533 - 6392665
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattc |
113 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||| | |||| | |||||| || ||| |||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
6392533 |
catcttcaagggtcaaactcacaaggaagatttcatc---ttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattc |
6392629 |
T |
|
| Q |
114 |
aaattcaatactgaaagcattttgtttatctcccaa |
149 |
Q |
| |
|
||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
6392630 |
aaaatgaatactgaaagcattttgtatgtctcccaa |
6392665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 6411673 - 6411805
Alignment:
| Q |
17 |
catcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattg---tcccattc |
113 |
Q |
| |
|
|||||||||| ||||| || |||||||||| |||| | |||| | |||||| || ||| |||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
6411673 |
catcttcaagggtcaaactcacaaggaagatttcatc---ttgcgtaaaattcttaacatagaaagctcctggaattcccatgtgattgggatcccattc |
6411769 |
T |
|
| Q |
114 |
aaattcaatactgaaagcattttgtttatctcccaa |
149 |
Q |
| |
|
||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
6411770 |
aaaatgaatactgaaagcattttgtatgtctcccaa |
6411805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 6265663 - 6265711
Alignment:
| Q |
110 |
attcaaattcaatactgaaagcattttgtttatctcccaatgttggcaa |
158 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6265663 |
attcaaattcaatgctgaaagctgtttgtttatctcccaatgttggcaa |
6265711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 588 - 662
Target Start/End: Original strand, 6340050 - 6340124
Alignment:
| Q |
588 |
ctttgagctgcagtcagttcgttgatgtctaagacattcttttgcatcaacaccacagttcccttcaccttttgg |
662 |
Q |
| |
|
|||||||||||||| | ||||||||| || || |||||||| |||||||| | ||| || ||||||||||||||| |
|
|
| T |
6340050 |
ctttgagctgcagtgatttcgttgatatccaatacattcttatgcatcaatatcactgtccccttcaccttttgg |
6340124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 703 - 752
Target Start/End: Original strand, 6373607 - 6373656
Alignment:
| Q |
703 |
atgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgt |
752 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
6373607 |
atgcttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgt |
6373656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 615 - 652
Target Start/End: Original strand, 6426635 - 6426672
Alignment:
| Q |
615 |
tctaagacattcttttgcatcaacaccacagttccctt |
652 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6426635 |
tctaacacattcttttgcatcaacaccacagttccctt |
6426672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 6333500 - 6333595
Alignment:
| Q |
18 |
atcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| || | ||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
6333500 |
atcttcaagcgtcaaacttacaaggaagaattctcc---tagcatgaaattttcaatataaaatgctcctggaattcccatctcactgtcccattcaaa |
6333595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 6276119 - 6276170
Alignment:
| Q |
65 |
aattctcaatataaaaagctcctggagttcccatgtcattgtcccattcaaa |
116 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||| | ||||||||||| |
|
|
| T |
6276119 |
aattctcaatataaaatgctcctggaattcccatctcactatcccattcaaa |
6276170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University