View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_high_17 (Length: 211)
Name: NF7461_2D_high_17
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47418943 - 47418753
Alignment:
| Q |
1 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
100 |
Q |
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| T |
47418943 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
47418844 |
T |
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| Q |
101 |
acttgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactgaacatttatctaaattgcatgg |
191 |
Q |
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| T |
47418843 |
acttgggtgtaatacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactgaacatttatctaaattgcatgg |
47418753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 47390583 - 47390415
Alignment:
| Q |
1 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
100 |
Q |
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| T |
47390583 |
tccgggacaaccactagttcatcatcatctttcagaccacaacctcatcctcatgattcacacataaggcaaattccacatccgagcattggtctaaatc |
47390484 |
T |
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| Q |
101 |
acttgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatctgtgtcaactg |
169 |
Q |
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| T |
47390483 |
acttaggtgcagaacgtcagagttctttcaatgatcctaagagaatgccaggtggatctgtgtcgactg |
47390415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 47407694 - 47407540
Alignment:
| Q |
4 |
gggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatcact |
103 |
Q |
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| T |
47407694 |
gggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcattggtctcaatcact |
47407595 |
T |
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| Q |
104 |
tgggtgtagaacggcagagtacattcaacgattctaagtgaatgcgaggttgatc |
158 |
Q |
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| T |
47407594 |
tgggtgtagaacagcagagtttattcaatgatcctaagagaatgcgaggtggatc |
47407540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 47421399 - 47421362
Alignment:
| Q |
4 |
gggacaataactggttcattatcatctctcagaccaca |
41 |
Q |
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| T |
47421399 |
gggacaatcactggttcattatcatctctcagaccaca |
47421362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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