View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7461_2D_high_3 (Length: 537)
Name: NF7461_2D_high_3
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Original strand, 35696653 - 35697163
Alignment:
| Q |
20 |
ccttgcaggttcgtcgaccttctggtcgtccacaagggattcttaacattggtgttaatgttgtcgatgctacgatgagaagcatgccgatgtattcgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696653 |
ccttgcaggttcgtcgaccttctggtcgtccacaagggattcttaacattggtgttaatgttgttgatgctacgatgagaagcatgccgatgtattcgga |
35696752 |
T |
|
| Q |
120 |
gcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696753 |
gcttagttcttcggctgttgaatattatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatg |
35696852 |
T |
|
| Q |
220 |
acgcttcaacgatcacaaagcgnnnnnnntgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctg |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696853 |
acgcttcaacgatcacaaagcgaaaaaaatgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctg |
35696952 |
T |
|
| Q |
320 |
aaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35696953 |
aaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggctgccgcgat |
35697052 |
T |
|
| Q |
420 |
agcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35697053 |
agcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatggcggggag |
35697152 |
T |
|
| Q |
520 |
atgttgaacac |
530 |
Q |
| |
|
||||||||||| |
|
|
| T |
35697153 |
atgttgaacac |
35697163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 47725359 - 47725280
Alignment:
| Q |
43 |
ggtcgtccacaagggattcttaacattggtgttaatgttg-tcgatgctacgatgagaagcatgccgatgtattcggagct |
122 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
47725359 |
ggtcgtccacaagggattcttaacatcggtgtt-acgttgctcgatagcacgatgagaagcatgccactttattcggagct |
47725280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University