View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_high_4 (Length: 463)
Name: NF7461_2D_high_4
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 46813346 - 46812902
Alignment:
| Q |
1 |
tcagttctccagggggacaaactttcagtgctttgctacaactggtgatggttctgttgttgttggttctttggatggaaagattcggctgtattctatc |
100 |
Q |
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| T |
46813346 |
tcagttctccagagggacaaactttcagtgctttgctacaactggtgatggttctgttgttgttggttctttggatggaaagattcggctgtattctatc |
46813247 |
T |
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| Q |
101 |
aactctatgaggcaggcgaaaaccgcttttcctggacttggttcacctgttactaatgtggatgtaacttttgatggaaagtggattgtgggaaccacgg |
200 |
Q |
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| T |
46813246 |
aactctatgaggcaggcgaaaaccgcttttcctggacttggttcacctgttactaatgtggatgtaacttttgatggaaagtggattgtgggaaccacgg |
46813147 |
T |
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| Q |
201 |
atacttacttggttgttatctgtacggtgtttactgataaagatgggaaaactaaaaatggttttgctggtagaatgggaaataatattgctgcaccaag |
300 |
Q |
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| T |
46813146 |
atacttacttggttgttatctgtacggtgtttactgataaagatgggaaaactaaaaatggttttgctggtagaatgggaaataatattgctgcaccaag |
46813047 |
T |
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| Q |
301 |
gttgctcaagctcaaccctcttgattcgcatcttgctggagtcaataacaaattccaaaaagctcagttttcgtgggtgagtatatcatttctgcatgct |
400 |
Q |
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| T |
46813046 |
gttgctcaagctcaaccctcttgattcgcatcttgctggagtcaataacaaattccaaaaagctcagttttcgtgggtgagtatatcatttctgcatgct |
46812947 |
T |
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| Q |
401 |
tgtttactattgtttccactgttgtcttgtaaattaagaatgatg |
445 |
Q |
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| T |
46812946 |
tgtttactattgtttctaccgttgtcttgtaaattaagaatgatg |
46812902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 33762607 - 33762339
Alignment:
| Q |
14 |
gggacaaactttcagtgctttgctacaactggtgatggttctgttgttgttggttctttggatggaaagattcggctgtattctatcaactctatgaggc |
113 |
Q |
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|||||||| ||||| |||||||| || || || |||||||| |||| || || ||| | ||||| ||||| || ||||||| | || || |||||| |
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| T |
33762607 |
gggacaaattttcaatgctttgcaactacaggagatggttcaattgtggtggggtctcttgatgggaagataaggttgtattcgaataaatcgatgagga |
33762508 |
T |
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| Q |
114 |
aggcgaaaaccgcttttcctggacttggttcacctgttactaatgtggatgtaacttttgatggaaagtggattgtgggaaccacggatacttacttggt |
213 |
Q |
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| T |
33762507 |
tggcgaagacggcttttccagggcttggttcacctattacaagcgttgatgttacttttgatggaaagtgggtgttgggtacaactgatacttatttggt |
33762408 |
T |
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| Q |
214 |
tgttatctgtacggtgtttactgataaagatgggaaaactaaaaatggttttgctggtagaatgggaaa |
282 |
Q |
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| T |
33762407 |
cttgatttgtacattgttcactgataaagatgggaagacaaagactggttttggtggtcgtatgggaaa |
33762339 |
T |
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