View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_2D_low_13 (Length: 404)

Name: NF7461_2D_low_13
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_2D_low_13
NF7461_2D_low_13
[»] chr2 (1 HSPs)
chr2 (1-404)||(14211564-14211967)


Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 14211967 - 14211564
Alignment:
Q  1 tatcaattctaacaacaataatttcaaggaacaagtcaattatagaagatgtgaagaaaaaaggtttaaggttatgtgatttagcaagcgccctaaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14211967 tatcaattctaacaacaataatttcaaggaacaagtcaattatagaagatgtgaagaaaaaaggtttaaggttatgtgatttagcaagtgccctaaaaca 14211868  T
Q  101 aaatattcatgaagcagcaattctaatctatttaatagatccatctcctatagatataaatacactggaaattttgccaatattagtagagattgtatgc 200  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211867 aaatgttcatgaagcagcaattctaatctatttaatatatccatctcctatagatataaatacactggaaattttgccaatattagtagagattgtatgc 14211768  T
Q  201 acttcatcacaaagttgttacaagagtaataagcaagaagaatcacttcttatgacacctcatgcagcatcattgatgatcattgaagaacttgtaactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14211767 acttcatcacaaagttgttacaagagtaataagcaagaagaatcacttcttatgacacctcatgcagcatcgttgatgatcattgaagaacttgtaactt 14211668  T
Q  301 catttgactatgctacaaataacatgcatttggaagtaatcagttcccctcatgttctcagtggacttatagaagttgcaagaaatcataatcttgatga 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211667 caattgactatgctacaaataacatgcatttggaagtaatcagttcccctcatgttctcagtggacttatagaagttgcaagaaatcataatcttgatga 14211568  T
Q  401 gttt 404  Q
    ||||    
T  14211567 gttt 14211564  T

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