View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_14 (Length: 345)
Name: NF7461_2D_low_14
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 33089060 - 33088749
Alignment:
| Q |
14 |
agtttggagttggaggaaccacatcaaccaagcaaagccattgatgaagagtaactatcagtaccaccgaatgagtcacccaaatgattaggcaaataag |
113 |
Q |
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| T |
33089060 |
agtttggagttggaggaaccacatcaatcaagcaa-gccattgatgaagagtaactatcagtaccaccgaatgagtcacccaaatgattaggcaaataag |
33088962 |
T |
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| Q |
114 |
ggagtcaaagaaagtgttgaaacacatgtgaagctataaagaaaagggctaaatgacttcaaatatatggtccttttacccttctaggttcaagtggttc |
213 |
Q |
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| T |
33088961 |
ggagtcaaagaaagtgttgaaacacatgtgaaggtataaagaaaagggctaaatggcttcaaatatatggtccttttacccttctaggttcaagtggttc |
33088862 |
T |
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| Q |
214 |
aaagttgcactccttttttgaactaagcaagttctgcatagtaatcaagttggagctgtgcacaacccaaaatgagagcttgtggccctaggaccaatgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33088861 |
aaagttgcactccttttttgaactaagcaagttctgcatagtaatcaagttggagctgtgcacaacccaaaatgagagcttgtggccctagggccaatgg |
33088762 |
T |
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| Q |
314 |
accttccccaatt |
326 |
Q |
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||| ||||||||| |
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| T |
33088761 |
accctccccaatt |
33088749 |
T |
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