View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_22 (Length: 272)
Name: NF7461_2D_low_22
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 24743527 - 24743680
Alignment:
| Q |
100 |
gcgtctttagttagtcattttaattgtcaaatgtgtttttcttactataatgacaacgcgtctgacacattcagagatcaaaatgactacttttcttttt |
199 |
Q |
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| T |
24743527 |
gcgtctttggttagtcattttaatcgtcaaatgtgtttctcttacgataatgacaacgcgtctgacacattcagagattaaaatgacta-ttttcttttt |
24743625 |
T |
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| Q |
200 |
ggaaactcagtatccaactcaaactcaacgagacactaatctgaggaattaatct |
254 |
Q |
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| T |
24743626 |
ggaaactcggtattggactcaaactcaatgagacactactttgaggaattaatct |
24743680 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24743463 - 24743499
Alignment:
| Q |
1 |
aatcccaaatccaagagt-aacaaccattttagtccc |
36 |
Q |
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| T |
24743463 |
aatcccaaatccaagagtaaacaaccattttagtccc |
24743499 |
T |
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