View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_23 (Length: 239)
Name: NF7461_2D_low_23
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47418919 - 47419144
Alignment:
| Q |
1 |
ataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaag |
100 |
Q |
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| T |
47418919 |
ataatgaaccagttattgtcccggaaaaatggctgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaag |
47419018 |
T |
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| Q |
101 |
gccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcc |
200 |
Q |
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| T |
47419019 |
gccttgcatgtgaatggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcc |
47419118 |
T |
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| Q |
201 |
tgaggttttttagcactgatgtccat |
226 |
Q |
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| T |
47419119 |
tgaggttttttagcactgatgtccat |
47419144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 47390574 - 47390784
Alignment:
| Q |
16 |
ttgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaac |
115 |
Q |
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| T |
47390574 |
ttgtcccggaaaaatggctgtagttaccaccactgcctccatatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaac |
47390673 |
T |
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| Q |
116 |
ggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagca |
215 |
Q |
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| T |
47390674 |
ggcagatctttcagtttcttgactaacagcaatagaactggatgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagca |
47390773 |
T |
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| Q |
216 |
ctgatgtccat |
226 |
Q |
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||||||||||| |
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| T |
47390774 |
ctgatgtccat |
47390784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47421378 - 47421603
Alignment:
| Q |
1 |
ataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaag |
100 |
Q |
| |
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||||||||||||| |||||||| ||||| |||| |||| | ||||||| || |||||| | |||||||||| ||||| ||||||||||| |||| || |
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| T |
47421378 |
ataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgttgttgctgattataaaa |
47421477 |
T |
|
| Q |
101 |
gccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcc |
200 |
Q |
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| T |
47421478 |
gccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcc |
47421577 |
T |
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| Q |
201 |
tgaggttttttagcactgatgtccat |
226 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
47421578 |
tgagattttttagcactgatgtccat |
47421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47407673 - 47407898
Alignment:
| Q |
1 |
ataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaag |
100 |
Q |
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||||||||||||| ||| |||| ||||| | || |||| ||||||||| || |||||| |||||| ||||||||||| ||||||||||| |||| || |
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| T |
47407673 |
ataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatggaaaatgtatatgttgttgttgctgattataaaa |
47407772 |
T |
|
| Q |
101 |
gccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcc |
200 |
Q |
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|||||| ||||||| | || ||||||||||||||| ||| | ||||||| |||| |||||||| ||| || ||| || |||||||||||||| |
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| T |
47407773 |
gccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcagtaattgagttggttccactgcttgaacatcatgttcc |
47407872 |
T |
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| Q |
201 |
tgaggttttttagcactgatgtccat |
226 |
Q |
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|||| |||||||| ||| |||||||| |
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| T |
47407873 |
tgagattttttagtactaatgtccat |
47407898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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