View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_25 (Length: 238)
Name: NF7461_2D_low_25
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 47419021 - 47419144
Alignment:
| Q |
102 |
cttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctg |
201 |
Q |
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| T |
47419021 |
cttgcatgtgaatggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctg |
47419120 |
T |
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| Q |
202 |
aggttttttagcactgatgtccat |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
47419121 |
aggttttttagcactgatgtccat |
47419144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 47390661 - 47390784
Alignment:
| Q |
102 |
cttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctg |
201 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47390661 |
cttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactggatgttggtaattgatttgattgcactactcgaacatcatgttcctg |
47390760 |
T |
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| Q |
202 |
aggttttttagcactgatgtccat |
225 |
Q |
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| T |
47390761 |
aggttttttagcactgatgtccat |
47390784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47418943 - 47418839
Alignment:
| Q |
1 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
100 |
Q |
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| T |
47418943 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
47418844 |
T |
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| Q |
101 |
acttg |
105 |
Q |
| |
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||||| |
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| T |
47418843 |
acttg |
47418839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 47421501 - 47421603
Alignment:
| Q |
123 |
tttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtc |
222 |
Q |
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||||||||||||||||||| | |||||||||||| | |||||||| ||| || ||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
47421501 |
tttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactactcgaacatcatgttcctgagattttttagcactgatgtc |
47421600 |
T |
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| Q |
223 |
cat |
225 |
Q |
| |
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||| |
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| T |
47421601 |
cat |
47421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47390583 - 47390480
Alignment:
| Q |
1 |
tccgggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatc |
100 |
Q |
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|||||||||| ||| |||||| ||||||| |||||||||||| ||||| |||||||| |||||||||| ||||||| ||| || |||||||||||||| |
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| T |
47390583 |
tccgggacaaccactagttcatcatcatctttcagaccacaacctcatcctcatgattcacacataaggcaaattccacatccgagcattggtctaaatc |
47390484 |
T |
|
| Q |
101 |
actt |
104 |
Q |
| |
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|||| |
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|
| T |
47390483 |
actt |
47390480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 47407694 - 47407593
Alignment:
| Q |
4 |
gggacaataactggttcattatcatctctcagaccacaacttcatcatcatgatttacacataaggagaattccagatctgaacattggtctaaatcact |
103 |
Q |
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|||| ||| |||||||||||||||||||| |||||||||| ||| | || ||| ||||| ||||||||||||| ||| || ||||||||| ||||||| |
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| T |
47407694 |
gggaaaatcactggttcattatcatctctaagaccacaacctcaacctctcaattcacacaaaaggagaattccacatcagagcattggtctcaatcact |
47407595 |
T |
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| Q |
104 |
tg |
105 |
Q |
| |
|
|| |
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|
| T |
47407594 |
tg |
47407593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 47421399 - 47421362
Alignment:
| Q |
4 |
gggacaataactggttcattatcatctctcagaccaca |
41 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
47421399 |
gggacaatcactggttcattatcatctctcagaccaca |
47421362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 47407796 - 47407898
Alignment:
| Q |
123 |
tttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtc |
222 |
Q |
| |
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||||||||||||||| ||| | ||||||| |||| |||||||| ||| || ||| || |||||||||||||||||| |||||||| ||| ||||| |
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| T |
47407796 |
tttcagtttcttgacaaatggtgttagaactagatggcagtaattgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtc |
47407895 |
T |
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| Q |
223 |
cat |
225 |
Q |
| |
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||| |
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|
| T |
47407896 |
cat |
47407898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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