View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_29 (Length: 231)
Name: NF7461_2D_low_29
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 40942920 - 40943094
Alignment:
| Q |
14 |
tggacatcatgcaacgtttccttcaaagtgcatcagaagcattacaatcttccttccttgctaccttaattgcatgtgaatttcaattcatcgttgactg |
113 |
Q |
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| T |
40942920 |
tggatatcatgcaacgtttccttcaaagtgcatcagaagcattgcaatcttccttacttgctaccttaattgcatgtgaatttcaattcatcgttgactg |
40943019 |
T |
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| Q |
114 |
taatggtatcagaattttgattcatcattgattgtaaatttgcatttctatcataaaagggttgtttggcaagac |
188 |
Q |
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| T |
40943020 |
taatggtatcagaattttgattcatcattgattgtaaatttgcatttctatcataaaagggttgtttggcaagac |
40943094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 40943117 - 40943154
Alignment:
| Q |
192 |
tagtttataaactcatgactaaaaattatatgtttggt |
229 |
Q |
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| T |
40943117 |
tagtttataaactcatgactaaaaaatacatgtttggt |
40943154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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