View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_2D_low_32 (Length: 219)

Name: NF7461_2D_low_32
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_2D_low_32
NF7461_2D_low_32
[»] scaffold0132 (1 HSPs)
scaffold0132 (3-206)||(12569-12773)
[»] scaffold0162 (1 HSPs)
scaffold0162 (3-206)||(9296-9500)
[»] chr5 (10 HSPs)
chr5 (3-206)||(2030589-2030803)
chr5 (3-206)||(34938210-34938413)
chr5 (3-206)||(25003637-25003839)
chr5 (3-206)||(23985582-23985787)
chr5 (104-206)||(29191386-29191487)
chr5 (104-196)||(23112279-23112371)
chr5 (11-68)||(7527898-7527955)
chr5 (3-43)||(17908449-17908489)
chr5 (3-67)||(32949861-32949926)
chr5 (130-170)||(7527982-7528021)
[»] scaffold0158 (1 HSPs)
scaffold0158 (3-206)||(23627-23830)
[»] chr6 (9 HSPs)
chr6 (3-206)||(35010516-35010719)
chr6 (3-206)||(27739777-27739974)
chr6 (3-206)||(14151235-14151439)
chr6 (104-206)||(14627252-14627353)
chr6 (116-206)||(1554886-1554977)
chr6 (104-196)||(221983-222074)
chr6 (145-206)||(16301241-16301302)
chr6 (3-69)||(19628089-19628156)
chr6 (3-43)||(16301460-16301500)
[»] chr3 (15 HSPs)
chr3 (3-206)||(18738561-18738764)
chr3 (3-206)||(54039786-54039989)
chr3 (3-114)||(51962520-51962630)
chr3 (3-112)||(54049166-54049276)
chr3 (135-206)||(51962406-51962477)
chr3 (104-206)||(18892814-18892915)
chr3 (104-196)||(23174534-23174625)
chr3 (104-195)||(18889587-18889677)
chr3 (131-206)||(17937078-17937153)
chr3 (3-69)||(12903201-12903267)
chr3 (116-170)||(9303674-9303729)
chr3 (155-206)||(9303923-9303974)
chr3 (131-206)||(11987409-11987483)
chr3 (133-176)||(14284144-14284187)
chr3 (3-69)||(17936984-17937051)
[»] scaffold0686 (1 HSPs)
scaffold0686 (3-206)||(7233-7434)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-206)||(167435-167637)
[»] chr7 (7 HSPs)
chr7 (31-206)||(7285668-7285844)
chr7 (3-176)||(14252568-14252745)
chr7 (3-206)||(47482141-47482345)
chr7 (116-206)||(15761398-15761489)
chr7 (131-206)||(13320144-13320218)
chr7 (3-51)||(48623739-48623787)
chr7 (3-69)||(13320050-13320117)
[»] scaffold0138 (2 HSPs)
scaffold0138 (24-189)||(28106-28272)
scaffold0138 (24-189)||(40102-40268)
[»] chr2 (9 HSPs)
chr2 (16-176)||(42179632-42179799)
chr2 (3-125)||(32464651-32464773)
chr2 (116-206)||(32464816-32464907)
chr2 (3-69)||(17203318-17203384)
chr2 (3-69)||(28032441-28032508)
chr2 (3-69)||(7513391-7513458)
chr2 (134-188)||(25266491-25266545)
chr2 (3-68)||(22255163-22255230)
chr2 (3-43)||(25266602-25266642)
[»] scaffold0833 (1 HSPs)
scaffold0833 (3-206)||(1924-2130)
[»] chr8 (10 HSPs)
chr8 (3-110)||(41508395-41508503)
chr8 (116-206)||(41508261-41508352)
chr8 (116-206)||(18618189-18618280)
chr8 (3-69)||(18611019-18611086)
chr8 (3-69)||(18617813-18617880)
chr8 (131-170)||(16040854-16040893)
chr8 (131-170)||(16042530-16042569)
chr8 (109-179)||(17151222-17151293)
chr8 (3-69)||(16040978-16041045)
chr8 (3-69)||(16042654-16042721)
[»] chr4 (15 HSPs)
chr4 (31-125)||(55378056-55378150)
chr4 (86-189)||(8043928-8044032)
chr4 (116-206)||(55377936-55378027)
chr4 (3-72)||(22737324-22737393)
chr4 (104-196)||(14910960-14911051)
chr4 (130-206)||(23271399-23271474)
chr4 (109-179)||(19019432-19019503)
chr4 (130-206)||(19019193-19019268)
chr4 (109-179)||(8373473-8373544)
chr4 (3-69)||(19698948-19699015)
chr4 (3-69)||(19709533-19709600)
chr4 (131-176)||(14502868-14502913)
chr4 (131-170)||(9794186-9794225)
chr4 (3-69)||(23271500-23271566)
chr4 (116-170)||(22737482-22737537)
[»] scaffold0244 (3 HSPs)
scaffold0244 (86-189)||(24205-24309)
scaffold0244 (104-189)||(17786-17872)
scaffold0244 (131-167)||(24294-24330)
[»] scaffold0125 (2 HSPs)
scaffold0125 (86-189)||(34241-34345)
scaffold0125 (131-167)||(34220-34256)
[»] scaffold0012 (2 HSPs)
scaffold0012 (104-196)||(223303-223394)
scaffold0012 (153-203)||(35078-35128)
[»] chr1 (4 HSPs)
chr1 (104-196)||(32650474-32650565)
chr1 (3-69)||(20252868-20252935)
chr1 (109-179)||(20253288-20253359)
chr1 (130-206)||(20253050-20253125)
[»] scaffold0066 (2 HSPs)
scaffold0066 (116-206)||(53330-53421)
scaffold0066 (3-69)||(44817-44884)
[»] scaffold1427 (1 HSPs)
scaffold1427 (104-196)||(1382-1473)
[»] scaffold0124 (1 HSPs)
scaffold0124 (121-194)||(36527-36601)
[»] scaffold0001 (3 HSPs)
scaffold0001 (3-69)||(165794-165861)
scaffold0001 (131-177)||(165617-165663)
scaffold0001 (132-177)||(165722-165767)
[»] scaffold0361 (1 HSPs)
scaffold0361 (129-170)||(2618-2659)
[»] scaffold0207 (2 HSPs)
scaffold0207 (131-176)||(16782-16827)
scaffold0207 (3-43)||(16688-16728)
[»] scaffold0892 (1 HSPs)
scaffold0892 (3-50)||(2563-2610)
[»] scaffold0342 (2 HSPs)
scaffold0342 (131-206)||(1915-1988)
scaffold0342 (3-43)||(2042-2082)
[»] scaffold0032 (1 HSPs)
scaffold0032 (131-170)||(14709-14748)
[»] scaffold0615 (1 HSPs)
scaffold0615 (3-65)||(7421-7483)
[»] scaffold0009 (1 HSPs)
scaffold0009 (3-109)||(98386-98493)
[»] scaffold0023 (1 HSPs)
scaffold0023 (3-69)||(57872-57940)
[»] scaffold1486 (1 HSPs)
scaffold1486 (3-43)||(1688-1728)
[»] scaffold0118 (1 HSPs)
scaffold0118 (3-68)||(35591-35657)


Alignment Details
Target: scaffold0132 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 12569 - 12773
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12569 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 12668  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  12669 aattcacaacatcatatatatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcacctgcacataatttcacatcaattac 12768  T
Q  202 atgat 206  Q
    |||||    
T  12769 atgat 12773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 9500 - 9296
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  9500 catatgttcacacaacaattcaccatattctcaccaatattacttgcataaatggagtcacaccaattcatcatttctcgacatatatgaactcaccaac 9401  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |    
T  9400 aattcacaacatcatatatatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacattaatttc 9301  T
Q  202 atgat 206  Q
    |||||    
T  9300 atgat 9296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 2030589 - 2030803
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2030589 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactaaccaac 2030688  T
Q  103 aattcacaacatc----------atatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttca 191  Q
    ||||||||| |||          |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2030689 aattcacaatatcatatatatatatatatatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttca 2030788  T
Q  192 catcaattacatgat 206  Q
    |||||||||||||||    
T  2030789 catcaattacatgat 2030803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 34938210 - 34938413
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  34938210 catatgttcatacaaacaattcaccatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaa 34938309  T
Q  102 caattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatta 200  Q
    |||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  34938310 caattcacaacaacata--tatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaaata 34938407  T
Q  201 catgat 206  Q
    ||||||    
T  34938408 catgat 34938413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 25003637 - 25003839
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  25003637 catatgttcacacaacaactcaccatattctcaccaatattacttgcatatatgcattcacaccaatttatcatttctcgacatatatgcactcaccaac 25003736  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    ||||||||||| ||||  |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||    
T  25003737 aattcacaacaacata--tatattcacccaccatatcataacaaacaatgtatatggattcaccaatatcatcaccttcacgtaatttcatatcaaatac 25003834  T
Q  202 atgat 206  Q
    |||||    
T  25003835 atgat 25003839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 23985787 - 23985582
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaac-tcaccaa 101  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||    
T  23985787 catatgttcacacaacaactcaccaaattctcaccattattatttgcataaatgcactcacaccaattcatcatttctctacacatatgcacatcaccaa 23985688  T
Q  102 caattcacaacatcatatttatattcac-caccatatcataataaacaatgtat--atggattcaccaatattatcaccttcacataatttcacatcaat 198  Q
    |||||||||||| ||||  | ||||||| ||||||||  | ||||||||| |||  |||||||||||||||| ||||||||||||||| |||| |||||     
T  23985687 caattcacaacaacata--tgtattcactcaccatattgttataaacaatatatgcatggattcaccaatatcatcaccttcacataacttcatatcaaa 23985590  T
Q  199 tacatgat 206  Q
    ||||||||    
T  23985589 tacatgat 23985582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 29191487 - 29191386
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattaca 202  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  29191487 attcacaacaacatat--atattcacccaccatatcataataaacaatatatatggattcaccaatatcatcaccttcacataatttcacatcaaataca 29191390  T
Q  203 tgat 206  Q
    ||||    
T  29191389 tgat 29191386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 23112371 - 23112279
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaa-tattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| |||||||| ||||||||||||||||    
T  23112371 attcacaacaacatat--atattcacccaccatatcataataaacaatgtagatgtattcaccaattatcatcacctttacataatttcacatca 23112279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 7527898 - 7527955
Alignment:
Q  11 cacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaa 68  Q
    ||||||||||||||||| |||||||||||||||| ||||||  ||||| |||||||||    
T  7527898 cacacaacaactcaccaaattctcaccaatattatttgcatttatgcaatcacaccaa 7527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 17908449 - 17908489
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  17908449 catatgttcacacaacaactcacaaaattctcaccaatatt 17908489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 32949861 - 32949926
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacacca 67  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||    
T  32949861 catatgtccacacaacaactcaccatatcttcaccaatatttatttgcatttatgcaatcacacca 32949926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 7527982 - 7528021
Alignment:
Q  130 caccatatcataataaacaatgtatatggattcaccaatat 170  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  7527982 caccatatcataataa-caatgtatatggactcaccaatat 7528021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 23627 - 23830
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  23627 catatgttcatacaaacaattcaccatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaa 23726  T
Q  102 caattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatta 200  Q
     ||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23727 taattcacaacaacata--tatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaatta 23824  T
Q  201 catgat 206  Q
    ||||||    
T  23825 catgat 23830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 35010719 - 35010516
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35010719 catatgttcatacaaacaattcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgtactcaccaa 35010620  T
Q  102 caattcacaacatcatatttatattcac-caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatta 200  Q
    ||||||||||||  | || ||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||    
T  35010619 caattcacaaca--agatatatattcactcaccatatcataataaacaatgtatatggattcaccaatatcattaccttcacataatttcacatcaaata 35010522  T
Q  201 catgat 206  Q
    ||||||    
T  35010521 catgat 35010516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 27739777 - 27739974
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     ||||    
T  27739777 catatgttcacacaacaactcaccatatcctcaccaatattacttgcatatatgcattcacaccaattcatcatttctcgacatatatgca-----caac 27739871  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    ||||||||||||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  27739872 aattcacaacatcata--tatattcacccaccatattataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaaatac 27739969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 14151235 - 14151439
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcattt-ctcgacatatatgaactcacca 100  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||||||||||||||||| |||| |||||||| |||| || |||||    
T  14151235 catatgttcacacaaacaactcaccatattctcaccaaaattacttgtgtatatgcattcacaccaattcattattttctcgacatgtatgcacccacca 14151334  T
Q  101 acaattcacaacatcatatttatattcaccac-catatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatt 199  Q
    ||||||| ||||| |||||  ||||||||||  |||||||| ||||||||||||| | ||||||||||||| |||| |||||||||||| |||||||| |    
T  14151335 acaattctcaacaacatat--atattcaccaatcatatcatcataaacaatgtatgtagattcaccaatatcatcatcttcacataattccacatcaaat 14151432  T
Q  200 acatgat 206  Q
    |||||||    
T  14151433 acatgat 14151439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 14627353 - 14627252
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattaca 202  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  14627353 attcacaacaacatat--atattcacccaccatatcataataaacaatatatatggattcaccaatatcatcaccttcacataatttcacatcaaataca 14627256  T
Q  203 tgat 206  Q
    ||||    
T  14627255 tgat 14627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 1554886 - 1554977
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  1554886 atatatatattcacccaccatatcataataaacaatgtatatggattcaccaaaatcatcaccttcacataatttcacatcacttacatgat 1554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 221983 - 222074
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  221983 attcacaacaacatat--atattcacccaccatatcataataaacaatgtatatggattcaccaacatcatcacctttacataatttcacatca 222074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 16301302 - 16301241
Alignment:
Q  145 aacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  16301302 aacaatgtatatagactcaccaatatcatcaccttcacataatttcacatcaattacatgat 16301241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 19628089 - 19628156
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  19628089 catatgttcatacaaacaattcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 19628156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 16301500 - 16301460
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  16301500 catatgttcacataacaactcaccaaattctcacaaatatt 16301460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 18738561 - 18738764
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18738561 catatgttcatacaacaactcaccatatcatcaccactattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgcactcaccaac 18738660  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    || |||||||||||||| |||||||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18738661 aactcacaacatcatatatatattcacccaccatattataat-aacaaagtatatggattcaccaatatcatcacctccacataatttcacatcaattac 18738759  T
Q  202 atgat 206  Q
    |||||    
T  18738760 atgat 18738764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 54039989 - 54039786
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  54039989 catatgttcatacaaacaattcaccatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaa 54039890  T
Q  102 caattcacaacatcatatttatattcac-caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatta 200  Q
    |||||||||||  ||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||    
T  54039889 caattcacaacgacata--tatattcacacaccctatcataataaacaatgtatatggattcaccaatatcatcaccttcatatagtttcacatcaaata 54039792  T
Q  201 catgat 206  Q
    ||||||    
T  54039791 catgat 54039786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 51962630 - 51962520
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51962630 catatgttcacacaacaactcgccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactc-ccaac 51962532  T
Q  103 aattcacaacat 114  Q
    |||||| |||||    
T  51962531 aattcataacat 51962520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 54049276 - 54049166
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  54049276 catatgttcatacaaacaattcaccatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaa 54049177  T
Q  102 caattcacaac 112  Q
    |||||||||||    
T  54049176 caattcacaac 54049166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 51962477 - 51962406
Alignment:
Q  135 tatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51962477 tatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaattacatgat 51962406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 18892814 - 18892915
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattaca 202  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || |    
T  18892814 attcacaacaacatat--atattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcacctttacataattacacatcaaatata 18892911  T
Q  203 tgat 206  Q
    ||||    
T  18892912 tgat 18892915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 23174534 - 23174625
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  23174534 attcacaacaacatat--atattcacccaccatatcataataaacaaagtatatggattcaccaatatcatcacctttacataatttcacatca 23174625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 18889587 - 18889677
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatc 195  Q
    |||||||||| |||||  ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  18889587 attcacaacaacatat--atattcacccaccgtatcataataaacaatgtatatggattcaccaatatcatcacctttacataatttcacatc 18889677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 17937078 - 17937153
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||   | ||||||||||||||| ||||||||    
T  17937078 accatatcataataaacaatgtatatggactcaccaatatcatcaccaatatataatttcacatcaaatacatgat 17937153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 12903267 - 12903201
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||| ||||||||||    
T  12903267 catatgttcacacaacaactcaccaaattctcaccaatattatttgcattcatgcaatcacaccaat 12903201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 9303729 - 9303674
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatat 170  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9303729 atatatatattcacccaccatatcataataaacaatgtatatggattcaccaatat 9303674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 9303974 - 9303923
Alignment:
Q  155 atggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  9303974 atggattcaccaatatcatcaccttctcataatttcatatcaattacatgat 9303923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 11987483 - 11987409
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    ||||||| ||||||||||||||||||| | |||||||||| ||| | ||||||||| |||| ||||| ||||||||    
T  11987483 accatattataataaacaatgtatatgaactcaccaatatcatctcattcacataa-ttcatatcaaatacatgat 11987409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 14284144 - 14284187
Alignment:
Q  133 catatcataataaacaatgtatatggattcaccaatattatcac 176  Q
    ||||||||||||||||||||||||||| |||||||||| |||||    
T  14284144 catatcataataaacaatgtatatggactcaccaatatcatcac 14284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 17936984 - 17937051
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||||    
T  17936984 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaat 17937051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 7434 - 7233
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  7434 catatgttcacacaacaactcaccatattctcaccaatattgtttgcataaatgcattcacatcaattcatcatttctcgacatacatgaactc-ccaac 7336  T
Q  103 aattcacaacatcatatttatattcaccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattaca 202  Q
    |||||| ||||| || | ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7335 aattcataacat-atgtatatattcacccacttatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaattaca 7237  T
Q  203 tgat 206  Q
    ||||    
T  7236 tgat 7233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 167637 - 167435
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  167637 catatgttcacacaacaactcaccattttctcaccaatattgtttgcataaatgcattcatatcaattcatcatttctcgacatatatgaactc-ccaac 167539  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    |||||| ||||| || | |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  167538 aattcataacat-atgtatatattcacccaccttatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaattac 167440  T
Q  202 atgat 206  Q
    |||||    
T  167439 atgat 167435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 7285844 - 7285668
Alignment:
Q  31 tctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatcatatttatattca-c 129  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  7285844 tctcaccaatattacttgcataaatgcatccacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatcatatatatattcacc 7285745  T
Q  130 caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||  |||||||    
T  7285744 caccatatcataataaacaatgtatatgaatccaccaatatcatcaccttcacataatttcacatcaaacacatgat 7285668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 14252745 - 14252568
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14252745 catatgttcatacaaacaactcaccatattctcatcaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 14252646  T
Q  102 caattcacaacatc--atatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcac 176  Q
    ||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  14252645 caattcacaacatcatatatatatattcacccaccatatcataataaacaatgtatatggattcatcaatatcatcac 14252568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 47482345 - 47482141
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||  ||||| ||||||||||   ||||||| |||| |||||| ||||||||||    
T  47482345 catatgtccacacaacaactcaccaaattctcaccaatattatttgcatttatgcaatcacaccaataattcatttcgcgacttatatgcactcaccaac 47482246  T
Q  103 aattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattac 201  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||| |||    
T  47482245 aattcacaacaacatatatatattcacccaccatatcataataaacaatatatatggattcaccaatatcatcacattcatataatttcacatcaaatac 47482146  T
Q  202 atgat 206  Q
    |||||    
T  47482145 atgat 47482141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 15761489 - 15761398
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  15761489 atatatatattcacccaccatatcataataaacaatgtatatggattcaccaaaatcatcaccttcacataatttcacatcacttacatgat 15761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 13320144 - 13320218
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||| | ||||||||| |||| ||||| ||||||||    
T  13320144 accatatcatagtaaacaatgtatatggactcaccaatatcatctcattcacataa-ttcatatcaaatacatgat 13320218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48623787 - 48623739
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcat 51  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  48623787 catatgtccacacaacaactcaccaaattctcaccaatattatttgcat 48623739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 13320050 - 13320117
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||||    
T  13320050 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaat 13320117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 28106 - 28272
Alignment:
Q  24 accatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatcatatttat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||    
T  28106 accatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaacaattcacaacaacatatatat 28205  T
Q  124 attca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataattt 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||    
T  28206 attcacccaccatatcataataaacaatgtatatggattcaccaatatcatcatctccacatcattt 28272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 40102 - 40268
Alignment:
Q  24 accatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatcatatttat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||    
T  40102 accatattctcaccaatattacttgcataaatgcattcacaccaattcgtcatttctcgacatatatgcactcaccaacaattcacaacaacatatatat 40201  T
Q  124 attca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataattt 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||    
T  40202 attcacccaccatatcataataaacaatgtatatggattcaccaatatcatcatctccacatcattt 40268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 42179799 - 42179632
Alignment:
Q  16 aacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatc 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42179799 aacaactcaccatattctcactaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatc 42179700  T
Q  116 ------atatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcac 176  Q
          |||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||    
T  42179699 atatatatatatatattcacccaccatatcataataaacaatgtatatggattcatcattatcatcac 42179632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 32464651 - 32464773
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||| ||    
T  32464651 catatgttcacacaacaactcaccaaattcacaccaatattacttgcataaatgcatgcacaccaattcgtcatttctcgacatatatgatcttaccgac 32464750  T
Q  103 aattcacaacatcatatttatat 125  Q
    |||||||||||||| || |||||    
T  32464751 aattcacaacatcacatatatat 32464773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 32464816 - 32464907
Alignment:
Q  116 atatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  32464816 atatatatattcatccaccatatcataataaacaacatatatggattcaccaatatcatcaatttcacataatttcacatcaattacatgat 32464907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 17203318 - 17203384
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||||  ||||| ||||||||||    
T  17203318 catatgttcacacaacaattcaccaaattctcaccaatattatttgcatttatgcaatcacaccaat 17203384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 28032508 - 28032441
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||||||||||||||||||||||||  ||||||||| ||| ||||||  ||||||||||||||||    
T  28032508 catatgttcacacaacaactcaccatatcatcaccaatatttatttgcatttatgcattcacaccaat 28032441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 7513458 - 7513391
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| | ||||||||||||||||||||||||||||  ||||| ||||||||||    
T  7513458 catatgttcatacaaacaatttaccatattctcaccaatattacttgcatttatgcaatcacaccaat 7513391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 25266545 - 25266491
Alignment:
Q  134 atatcataataaacaatgtatatggattcaccaatattatcaccttcacataatt 188  Q
    |||||||| ||||||||||||||||| |||||||||| ||| | |||||||||||    
T  25266545 atatcatagtaaacaatgtatatggactcaccaatatcatctcattcacataatt 25266491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 22255163 - 22255230
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaa-tattacttgcataaatgcattcacaccaa 68  Q
    |||||||||| |||| ||| |||||||||||||||||| ||||||||||||  ||||| |||||||||    
T  22255163 catatgttcatacaaacaattcaccatattctcaccaattattacttgcatttatgcaatcacaccaa 22255230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 25266642 - 25266602
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  25266642 catatgtccacacaacaactcaccatatcatcaccaatatt 25266602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 1924 - 2130
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaac 102  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||| ||||||||||   |||||||||||| |||||| ||| ||||||    
T  1924 catatgttcacacaacaactcaccaaattctcaccaatattatttgcatttatgcaatcacaccaataattcatttctcgacttatatgcactgaccaac 2023  T
Q  103 aattcacaacatc--atatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaatt 199  Q
    ||||||||||| |  |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||| |    
T  2024 aattcacaacaacatatatatatattcacccaccatatcataataaacaatatatatggattcaccaatatcatcaccttcatataatttcacgtcaaat 2123  T
Q  200 acatgat 206  Q
    || ||||    
T  2124 acgtgat 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 41508503 - 41508395
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 101  Q
    |||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41508503 catatgttcatacaaacaattcaccatattctcaccaatattacctgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaa 41508404  T
Q  102 caattcaca 110  Q
    |||||||||    
T  41508403 caattcaca 41508395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 41508352 - 41508261
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  41508352 atatatatattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcaccttcacataatttcacatcaattgcatgat 41508261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 18618189 - 18618280
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||| |||||||||    
T  18618189 atatatatattcacccaccatatcataataaacaatgtatatggattcacaaaaatcatcaccttcacataatttgacatcacttacatgat 18618280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 18611019 - 18611086
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  18611019 catatgttcatacaaacaattcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 18611086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 18617813 - 18617880
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  18617813 catatgttcatacaaacaattcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 18617880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 16040893 - 16040854
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatat 170  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  16040893 accatatcataataaacaatgtatatggactcaccaatat 16040854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 16042569 - 16042530
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatat 170  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  16042569 accatatcataataaacaatgtatatggactcaccaatat 16042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 17151293 - 17151222
Alignment:
Q  109 caacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcacctt 179  Q
    |||||| |||| |||||||| |||| ||||||||||||  |||||||||||||||||||| || ||||||||    
T  17151293 caacataatatatatattcaaccacaatatcataataaggaatgtatatggattcaccaaaatcatcacctt 17151222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16041045 - 16040978
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||||    
T  16041045 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaat 16040978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 16042721 - 16042654
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||||    
T  16042721 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaat 16042654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 55378150 - 55378056
Alignment:
Q  31 tctcaccaatattacttgcataaatgcattcacaccaattcatcatttctcgacatatatgaactcaccaacaattcacaacatcatatttatat 125  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55378150 tctcaccaatattacttgcataaatgcatccacaccaatttatcatttctcgacatatatgaactcaccaacaattcacaacatcatatatatat 55378056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 8043928 - 8044032
Alignment:
Q  86 tatatgaactcaccaacaattcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacat 184  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| || |||||    
T  8043928 tatatggactcaccaacaattcacaacatcatatatatattcacccaccacatcataataaacaatgtatatggattcaccaatatcatcatctccacat 8044027  T
Q  185 aattt 189  Q
     ||||    
T  8044028 cattt 8044032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 55378027 - 55377936
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||    
T  55378027 atatatatattcacccaccatatcataataaataatgtatatggatccaccaatatcatcaccttcacataatttcacatcaaatacatgat 55377936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 22737324 - 22737393
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaattca 72  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  22737324 catatgttcccacaacaactcaccatattcacaccaatattacttgcataattgcattcacaccaattca 22737393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 14910960 - 14911051
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||    
T  14910960 attcacaacaacatat--atattcacccaccaaatcataataaacaatgtatatcgatacaccaatatcatcacctttacataatttcacatca 14911051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 23271474 - 23271399
Alignment:
Q  130 caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||| ||||| ||||||||    
T  23271474 caccatatcataataaacaatgtatatggattcaccaatatca-ccccttcacataatctcatatcaaatacatgat 23271399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 19019432 - 19019503
Alignment:
Q  109 caacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcacctt 179  Q
    ||||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||| || ||||||||    
T  19019432 caacatcatatatatattcacccaccatatcataataaggaatgtatatggattcaccaaaatcatcacctt 19019503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 19019193 - 19019268
Alignment:
Q  130 caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  19019193 caccatgtcataataaaca-tacacatggattcaccaatatcatcaccttctcataatttcatatcaattacatgat 19019268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 8373473 - 8373544
Alignment:
Q  109 caacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcacctt 179  Q
    |||||| |||| |||||||||| |||||||||||||||  |||||||||||||||||||| || ||||||||    
T  8373473 caacataatatatatattcacccaccatatcataataaggaatgtatatggattcaccaaaatcatcacctt 8373544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 19699015 - 19698948
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  19699015 catatgttcatacaaacaattcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 19698948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 19709600 - 19709533
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  19709600 catatgttcatacaaacaattcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 19709533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 14502913 - 14502868
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcac 176  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  14502913 accatatcataataaacaatgtatatggactcaccaatatcatcac 14502868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 9794186 - 9794225
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatat 170  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  9794186 accatatcataataaacaatgtatatggactcaccaatat 9794225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 23271566 - 23271500
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  |||||||||||| ||||||  ||||| | ||||||||    
T  23271566 catatgtccacacaacaactcaccatatcatcaccaatattatttgcatttatgcaattacaccaat 23271500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 22737482 - 22737537
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatat 170  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| |||| ||||||    
T  22737482 atatatatattcacccaccatatcataataaacaacgtatatggtttcatcaatat 22737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 24309 - 24205
Alignment:
Q  86 tatatgaactcaccaacaattcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacat 184  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| || |||||    
T  24309 tatatggactcaccaacaattcacaacatcatatatatattcacccaccacatcataataaacaatgtatatggattcaccaatatcatcatctccacat 24210  T
Q  185 aattt 189  Q
     ||||    
T  24209 cattt 24205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 17872 - 17786
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataattt 189  Q
    |||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||| | |||||| |||| || ||||| ||||    
T  17872 attcacaacatcatatatatattcacccaccacatcgtaataaacaatgtatatggatttatcaatatcatcatctccacatcattt 17786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 24330 - 24294
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaa 167  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24330 accatatcataataaacaatgtatatggactcaccaa 24294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 34241 - 34345
Alignment:
Q  86 tatatgaactcaccaacaattcacaacatcatatttatattca-ccaccatatcataataaacaatgtatatggattcaccaatattatcaccttcacat 184  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||| |||| || |||||    
T  34241 tatatggactcaccaacaattcacaacatcatatatatattcacccaccacatcataataaccaatgtatatggattcaccaatatcatcatctccacat 34340  T
Q  185 aattt 189  Q
     ||||    
T  34341 cattt 34345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 34220 - 34256
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaa 167  Q
    |||||||||||||||| |||||||||||| |||||||    
T  34220 accatatcataataaagaatgtatatggactcaccaa 34256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 223394 - 223303
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  223394 attcacaacaacatat--atattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcacctttacataatttcacatca 223303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 35128 - 35078
Alignment:
Q  153 atatggattcaccaatattatcaccttcacataatttcacatcaattacat 203  Q
    |||||||||||||||||| ||||||||| |||||||||  |||||||||||    
T  35128 atatggattcaccaatatcatcaccttctcataatttcctatcaattacat 35078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 32650474 - 32650565
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  32650474 attcacaacaacatat--atattcacccaccatatcataataaacaatgtatatggattcaccaatatcatcacccttacataatttcacatca 32650565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 20252868 - 20252935
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttgcataaatgcattcacaccaat 69  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  20252868 catatgttcatacaaacaactcaccatattctcaccaatattacttgcatttatgcaatcacaccaat 20252935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 20253288 - 20253359
Alignment:
Q  109 caacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcacctt 179  Q
    ||||||||||| |||||||||| |||||||||||||||  |||||||||||||||||||| || ||||||||    
T  20253288 caacatcatatatatattcacccaccatatcataataaggaatgtatatggattcaccaaaatcatcacctt 20253359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 20253050 - 20253125
Alignment:
Q  130 caccatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||||| |||||||||||| |  | |||||||||||||| | ||||||||| |||||||||| ||||||||||||||    
T  20253050 caccatgtcataataaaca-tacacatggattcaccaatgtcatcaccttctcataatttcatatcaattacatgat 20253125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 53330 - 53421
Alignment:
Q  116 atatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||| | ||| || ||||||||| ||||||||||||||| |||||||||    
T  53330 atatatatattcacccaccatatcataataaagaatgtatatggattaatcaaaatcatcaccttctcataatttcacatcacttacatgat 53421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 44817 - 44884
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| ||||||||||    
T  44817 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaat 44884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 1382 - 1473
Alignment:
Q  104 attcacaacatcatatttatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatca 196  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||| | ||||||||||||||||    
T  1382 attcacaacaacatat--atattcacccaccatatcataataaacaatgtatatcgatacaccaatatcatcacccttacataatttcacatca 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 36601 - 36527
Alignment:
Q  121 tatattcacc-accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacat 194  Q
    |||||||||| |||| ||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  36601 tatattcacccaccaaatcataataaacaatgtatatcgatacaccaatatcatcacctttacataatttcacat 36527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 165861 - 165794
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaat 69  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| ||||||  ||||| ||||||||||    
T  165861 catatgttcacacaacaactcaccaaattctcaccaatatttatttgcatttatgcaatcacaccaat 165794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 165663 - 165617
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcacc 177  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||    
T  165663 accatatcataataaacaatgtatttggactcaccaatatcatcacc 165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 165767 - 165722
Alignment:
Q  132 ccatatcataataaacaatgtatatggattcaccaatattatcacc 177  Q
    |||||||| ||||||||||||||||||| ||| |||||| ||||||    
T  165767 ccatatcacaataaacaatgtatatggactcatcaatatcatcacc 165722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 2618 - 2659
Alignment:
Q  129 ccaccatatcataataaacaatgtatatggattcaccaatat 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  2618 ccaccatatcataataaacaatgtatatggactcaccaatat 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 16782 - 16827
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcac 176  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  16782 accatatcataataaacaatgtatatggactcaccaatatcatcac 16827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 16688 - 16728
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  16688 catatgtccacacaacaactcaccatatcatcaccaatatt 16728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 2563 - 2610
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgca 50  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  2563 catatgtccacacaacaactcaccaaattctcaccaatattatttgca 2610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 1988 - 1915
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatattatcaccttcacataatttcacatcaattacatgat 206  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||| | ||||||||| |||| ||||| ||||||||    
T  1988 accatatcataataa-caatgtatatggactcaccaatatcatctcattcacataa-ttcatatcaaatacatgat 1915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 2082 - 2042
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  2082 catatgtccacacaacaactcaccatatcatcaccaatatt 2042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 14748 - 14709
Alignment:
Q  131 accatatcataataaacaatgtatatggattcaccaatat 170  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  14748 accatatcataataaacaatgtatatggactcaccaatat 14709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 7483 - 7421
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatattacttgcataaatgcattcacac 65  Q
    ||||||| ||||||||||||||||| |||||||||||||| | ||||||  ||||| ||||||    
T  7483 catatgtccacacaacaactcaccaaattctcaccaatatcatttgcatttatgcaatcacac 7421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 98493 - 98386
Alignment:
Q  3 catatgttcacacaa-caactcaccatattctcaccaatattacttg-cataaatgcattcac-accaattcatcatttctcgacatatatgaactcacc 99  Q
    ||||||||||||||| ||| |||||| |||||||||||    ||||  |||| |||||||||| | ||||||| |||| || ||||||||||||||||||    
T  98493 catatgttcacacaaacaattcaccacattctcaccaaac--acttaacatatatgcattcaccaacaattcaccattacttgacatatatgaactcacc 98396  T
Q  100 aacaattcac 109  Q
    ||||||||||    
T  98395 aacaattcac 98386  T

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Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 57940 - 57872
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata--ttacttgcataaatgcattcacaccaat 69  Q
    ||||||||||||||||||||||||||||  |||||||||  ||| ||||||  ||||| ||||||||||    
T  57940 catatgttcacacaacaactcaccatatcatcaccaatattttatttgcatttatgcaatcacaccaat 57872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1486 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1486
Description:

Target: scaffold1486; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 1688 - 1728
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaatatt 43  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  1688 catatgttcacacaacaactcaccatatcatcaccaatatt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 35657 - 35591
Alignment:
Q  3 catatgttcacacaacaactcaccatattctcaccaata-ttacttgcataaatgcattcacaccaa 68  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| ||||||  ||||| |||||||||    
T  35657 catatgtccacacaacaactcaccatatcatcaccaatatttatttgcatttatgcaatcacaccaa 35591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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