View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_2D_low_9 (Length: 450)
Name: NF7461_2D_low_9
Description: NF7461_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_2D_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 56168526 - 56168975
Alignment:
| Q |
1 |
atcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56168526 |
atcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggc |
56168625 |
T |
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| Q |
101 |
tcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattc |
200 |
Q |
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| T |
56168626 |
tcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattc |
56168725 |
T |
|
| Q |
201 |
ctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaaggcatgaagcttcca |
300 |
Q |
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| T |
56168726 |
ctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaaggcatgaagcttcca |
56168825 |
T |
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| Q |
301 |
aattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattagagaactttcttttgaggtttaaaggcatatatgcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
56168826 |
aattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattaaagaactttcttttgaggtttaaaggcatatatgcg |
56168925 |
T |
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| Q |
401 |
tattgcaggtaataatatcaatgaacattttgctactgatgcttaggagc |
450 |
Q |
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| T |
56168926 |
tattgcaggtaataatatcaatgaacattttactagtgatgcttaggagc |
56168975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 707184 - 706739
Alignment:
| Q |
1 |
atcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggc |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707184 |
atcagagggaaattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcctgatgtggc |
707085 |
T |
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| Q |
101 |
tcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggctacaacattc |
200 |
Q |
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| T |
707084 |
tcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtaccggccgtgcaggaaagacgggtgtggctacaacattc |
706985 |
T |
|
| Q |
201 |
ctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaaggcatgaagcttcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
706984 |
ctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacatgaattggcaaggcatgaagcttcca |
706885 |
T |
|
| Q |
301 |
aattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattagagaactttcttttgaggtttaaaggcatatatgcg |
400 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
706884 |
aattcaagccaggatctattcccgacagaccacctaggcgaaacgacactgtttttacccattagagaactttc--ttgaggtttaaaggcatatatgca |
706787 |
T |
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| Q |
401 |
tattgcaggtaataatatcaatgaacattttgctactgatgcttaggagc |
450 |
Q |
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||||||||||| |||||||||||| ||||||| | |||||||||||||| |
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| T |
706786 |
tattgcaggta--aatatcaatgaatattttgcaagtgatgcttaggagc |
706739 |
T |
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