View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7461_high_10 (Length: 333)
Name: NF7461_high_10
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_high_10 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 84 - 333
Target Start/End: Original strand, 34352896 - 34353150
Alignment:
| Q |
84 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
|
| Q |
184 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
|
| Q |
284 |
acaaaataag-----caaaacaaaacaaaaatagtgtgaaaccgacctgtgtaat |
333 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353096 |
acaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaat |
34353150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 34358547 - 34358679
Alignment:
| Q |
96 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
|
| Q |
196 |
accattggcgtttttcctatgagctgtaccatg |
228 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34358647 |
accattggcgtttttcctatgagttgtgccatg |
34358679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
106 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| | ||| || ||||| ||||||||||| | |
|
|
| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
|
| Q |
206 |
tttttcctatgagctg |
221 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 34358723 - 34358775
Alignment:
| Q |
284 |
acaaaataagcaaaa-caaaacaaaaata--gtgtgaaaccgacctgtgtaat |
333 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34358723 |
acaaaataagaaaaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaat |
34358775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University