View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_high_23 (Length: 254)
Name: NF7461_high_23
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_high_23 |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 6199146 - 6199379
Alignment:
| Q |
4 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttacaattttgggcgatttacggtgggacatctgcgatgtcagcctttt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| || ||| |||||||| |
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| T |
6199146 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttacaattatgggctatttacggtgggagatctacggtgttagcctttt |
6199245 |
T |
|
| Q |
104 |
aattactttgcgttcccagggtttgtttggtacttctatataatcgttctatttgttttatgctataaggagatatgaatcatataaattgaattgattg |
203 |
Q |
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|||||||||| ||||||||| |||||||||| |||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6199246 |
aattactttgtgttcccaggttttgtttggtgcttcaatatcatcgttctttttgttttatgttataaggagatatgaatcatataaattgaattgattg |
6199345 |
T |
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| Q |
204 |
tggttttgtatctatacacgtaggccatcttttg |
237 |
Q |
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| T |
6199346 |
tggttttgtatctatacacgtatgccatcttttg |
6199379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 9066854 - 9067091
Alignment:
| Q |
4 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttacaattttgggcgatttacggtgggacatctgcgatgtcagcctttt |
103 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || ||| |||||||| |
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| T |
9066854 |
gagattcatgcatggtctctgtttcaatttgatgaacacgtaatatgatctttacaattatcggcgatttacggtgggacatctacggtgttagcctttt |
9066953 |
T |
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| Q |
104 |
aattactttgcgttcccagggtttgtttggtacttctatataatcgttct----atttgttttatgctataaggagatatgaatcatataaattgaattg |
199 |
Q |
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| T |
9066954 |
aattactttgtgttcccaggttttgtttggtacttctatataatcgttctattaatttgttttatgttataaggagatatgaatcatataaattgaattg |
9067053 |
T |
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| Q |
200 |
attgtggttttgtatctatacacgtaggccatcttttg |
237 |
Q |
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| T |
9067054 |
attgtggttttgtatctatacacgtatgccatcttttg |
9067091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 17008278 - 17008494
Alignment:
| Q |
4 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttacaattttgggcgatttacggtgggacatctgcgatgtcagcctttt |
103 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||| || ||| ||| |||| |
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| T |
17008278 |
gagattcacgcacggtctctttttcaatttgatgtacacg-aatatgatctttacaattttgggcgatttacggtgcgccatctacggtgttagcttttt |
17008376 |
T |
|
| Q |
104 |
aattactttgcgttcccagggtttgtttggtacttctatataatcgttctatttgttttatgctataaggagatatgaatcatataaattgaattgattg |
203 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
17008377 |
aattactttgcgttcccaggtttcgtttggtacttctatataatcattctatttgttttatgttataaggatatatgaatcatataaattgaattgattg |
17008476 |
T |
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| Q |
204 |
tggttttgtatctataca |
221 |
Q |
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|||||||||||||||||| |
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| T |
17008477 |
tggttttgtatctataca |
17008494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 17540672 - 17540456
Alignment:
| Q |
4 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttacaattttgggcgatttacggtgggacatctgcgatgtcagcctttt |
103 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||| || ||| ||| |||| |
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| T |
17540672 |
gagattcacgcacggtctctttttcaatttgatgtacacg-aatatgatctttacaattttgggcgatttacggtgcgccatctacggtgttagcttttt |
17540574 |
T |
|
| Q |
104 |
aattactttgcgttcccagggtttgtttggtacttctatataatcgttctatttgttttatgctataaggagatatgaatcatataaattgaattgattg |
203 |
Q |
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|
|||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
17540573 |
aattactttgcgttcccaggtttcgtttggtacttctatataatcattctatttgttttatgttataaggatatatgaatcatataaattgaattgattg |
17540474 |
T |
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| Q |
204 |
tggttttgtatctataca |
221 |
Q |
| |
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|||||||||||||||||| |
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| T |
17540473 |
tggttttgtatctataca |
17540456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 26907928 - 26907846
Alignment:
| Q |
155 |
tttgttttatgctataaggagatatgaatcatataaattgaattgattgtggttttgtatctatacacgtaggccatcttttg |
237 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
26907928 |
tttgttttatgttataaggagatatgaatcatataaattgaattgattgtggttttgtatctatacacgtatgtcatcttttg |
26907846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 1145 - 911
Alignment:
| Q |
4 |
gagattcacgcacggtctctgtttcaatttgatgaacacgtaatatgatctttac-aattttgggcgatttacggtgggacatctgcgatgtcagccttt |
102 |
Q |
| |
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|||||||||| ||||||||| || ||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||| || ||| ||| ||| |
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| T |
1145 |
gagattcacggacggtctcttttacaatttgatgaacacgtaatagaattttttttaattttgggcgatttacggtgggcgatctacggtgttagctttt |
1046 |
T |
|
| Q |
103 |
taattactttgcgttcccagggtttgtttggtacttctatataatcgttctatttgttttatgctataaggagatatgaatcatataaattgaattgatt |
202 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1045 |
taattactttgcgttcccaggttttgtttggtacttctatataatcgttctattcgttttatgttataaggagatatgaatcatataaattgaattgatt |
946 |
T |
|
| Q |
203 |
gtggttttgtatctatacacgtaggccatcttttg |
237 |
Q |
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|||||||| |||||||||||||| | ||||||||| |
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| T |
945 |
gtggttttttatctatacacgtatgtcatcttttg |
911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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