View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_low_10 (Length: 404)

Name: NF7461_low_10
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_low_10
NF7461_low_10
[»] chr1 (2 HSPs)
chr1 (59-389)||(39422750-39423075)
chr1 (22-56)||(39422692-39422726)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 59 - 389
Target Start/End: Original strand, 39422750 - 39423075
Alignment:
Q  59 ttcatcgacaatgttcagctaggccttacaaacatatgttcttaatcaaagatctttgtaagaacaatcctggtattgaaaccttgtactacaagtttca 158  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39422750 ttcatcgacaatgttcagctaggccttacaaacacatgttcttaatcaaagatctttgtaagaacaatcctggtattaaaaccttgtactacaagtttca 39422849  T
Q  159 cttatctttaatagagtgagacattataatttgaaaaatgtatttaactatccacaacatttaaagactattttaa---cnnnnnnnnnnnccttcccaa 255  Q
    |||||||||||  || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |           |||||||||    
T  39422850 cttatctttaaccgaatgacacattataatttcaaaaatgtatttaactatccacaacatttaaagactattttaacttctttttttttttccttcccaa 39422949  T
Q  256 ttttgagattgatttactcggtctcttgcaagttataatccgtccaaccaaacttttgttgaatgggcatatgaagaaggcccatacacactgatggaa- 354  Q
    ||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39422950 ttttgagattgatttactcg-----------gttataatccgtccaaccaaacttttgttgaatgggcatatgaagaaggcccatacacactgatggaac 39423038  T
Q  355 --catccatggatgtatagggaaagcaacttcagcat 389  Q
      |||||||||||||||||||||||||||||||||||    
T  39423039 atcatccatggatgtatagggaaagcaacttcagcat 39423075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 39422692 - 39422726
Alignment:
Q  22 actgtacaccttaatacacattatcacgctccaca 56  Q
    |||||||||||||||||||||||||||||||||||    
T  39422692 actgtacaccttaatacacattatcacgctccaca 39422726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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