View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_11 (Length: 392)
Name: NF7461_low_11
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 16974579 - 16974844
Alignment:
| Q |
18 |
gggacgagaacaccaaacaatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaactttcactgtgcgttcggagtc |
117 |
Q |
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| T |
16974579 |
gggacgagaacaccaaacaatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaaatttcactgtgcgttcggagtc |
16974678 |
T |
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| Q |
118 |
tagttttagtttagcaagaaacaagctacagatcaaaggccttcagaatgcctcctacaacttgtcttgtggttgcgatgctgattccgctccacatcaa |
217 |
Q |
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| T |
16974679 |
tggttttagtttagcaagagacaagctatacatcaaaggccttcagaatacctcctacaacttgtcttgtggttgcgatgctgattccgctccacatcaa |
16974778 |
T |
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| Q |
218 |
attctcgagcctcacagaggtctcgagggttttgaggtgagcggttatggagaagtaaatatttca |
283 |
Q |
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| T |
16974779 |
attctcgagcctcagagaggtctcgagggttttaagatgagcagttatggagaagtaaatatttca |
16974844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 282 - 375
Target Start/End: Original strand, 16975035 - 16975128
Alignment:
| Q |
282 |
cagacgatgatggtccatctttctcgagagaaattgcaggtggtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggt |
375 |
Q |
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| T |
16975035 |
cagacgatgatggtccatctttctcgagagaaattgcaggtagtatgtataacctcaaagaacttatgattgaaaactttgatgaacttgaggt |
16975128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 16911182 - 16911221
Alignment:
| Q |
66 |
aactttcattcactacaatgccttctacaactttcactgt |
105 |
Q |
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| T |
16911182 |
aactttcattcactacaatgccttctacaactttcactgt |
16911221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 16916386 - 16916425
Alignment:
| Q |
66 |
aactttcattcactacaatgccttctacaactttcactgt |
105 |
Q |
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| T |
16916386 |
aactttcattcactacaatgccttctacaactttcactgt |
16916425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 16966228 - 16966277
Alignment:
| Q |
62 |
tatcaactttcattcactacaatgccttctacaactttcactgtgcgttc |
111 |
Q |
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| T |
16966228 |
tatcaactttcattcacaacaatgccttctataactttcaccatgcgttc |
16966277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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