View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_low_12 (Length: 368)

Name: NF7461_low_12
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_low_12
NF7461_low_12
[»] chr3 (6 HSPs)
chr3 (18-353)||(49192324-49192659)
chr3 (22-338)||(49188603-49188919)
chr3 (25-338)||(49213456-49213769)
chr3 (22-338)||(49208616-49208932)
chr3 (22-338)||(49203441-49203756)
chr3 (131-350)||(29622865-29623084)
[»] chr1 (4 HSPs)
chr1 (22-338)||(37031114-37031430)
chr1 (25-338)||(32591897-32592210)
chr1 (22-338)||(31527721-31528037)
chr1 (22-338)||(51825124-51825440)
[»] chr8 (1 HSPs)
chr8 (22-338)||(26756982-26757298)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 49192659 - 49192324
Alignment:
18 aaattacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49192659 aaattacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagc 49192560  T
118 cttctcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49192559 cttctcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcg 49192460  T
218 ctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
49192459 ctgcatcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttatt 49192360  T
318 gatttacaatgctaatgttaaacagttagttgatgt 353  Q
    ||||||||||||||||||||||||||||||||||||    
49192359 gatttacaatgctaatgttaaacagttagttgatgt 49192324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 49188919 - 49188603
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| || ||||||||||| || ||| ||||||||||||    
49188919 tacacctttgaagttcaagctatgagtgccgagaaacttccttttgttctccccgccgtcttcacaattggtcctcgtgttgacgatcaggaaagccttc 49188820  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    ||||||||||||||||||||||||| || |||  || ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
49188819 tcaaatacgccaaacttatttcacctcatgatcgacactccaatcacgttaatgaactcgttcaaggaatcatcgaaggggagacacgtgtcctcgctgc 49188720  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||  ||||||||||| ||  | || |||||||| |||||||||    
49188719 ttccatgaccatggaggaggttttcagaggaacgaaacagtttaaacaagaagtatttgacaaagttcaacttgagttgaatcaattcggattattgatt 49188620  T
322 tacaatgctaatgttaa 338  Q
    |||||||| ||||||||    
49188619 tacaatgcgaatgttaa 49188603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 49213769 - 49213456
Alignment:
25 acctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttctca 124  Q
    ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| |||||||||||||||||||||||||| || ||| |||||||||| ||||    
49213769 accttcgaagttcaagccatgagtgccgaaaaactccctttcgttctccctgctgtcttcactatcggtcctcgtgttgacgatcaggaaagcctcctca 49213670  T
125 aatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatc 224  Q
    |||||||||||||||||||||| || |||| || ||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||| ||    
49213669 aatacgccaaacttatttcaccccatgatagacactccaatcatgttaatgaacttgttcaaggaatcattgaaggtgagacacgtgtcctagctgcctc 49213570  T
225 aatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttac 324  Q
     ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||  | || |||||||| |||||||||||     
49213569 catgactatggaggaggttttcagaggaacaaaacagtttaaacaagaagtatttgataaagttcaacttgagttgaatcaattcgggttattgatttat 49213470  T
325 aatgctaatgttaa 338  Q
    ||||| ||||||||    
49213469 aatgcgaatgttaa 49213456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 49208932 - 49208616
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||| ||||||||||| ||||| || || ||||| ||||| || ||||| || |||||||| |||||||||||||| || ||| | |||||||| |    
49208932 tacaccttcgaagttcaagccatgagtgctgaaaaactccctttcgtcctccctgccgtcttcacaatcggtcctcgtgttgacgattacgaaagcctcc 49208833  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    ||||||| |||||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||    
49208832 tcaaatatgccaaactaatttcccctcatgataaactctccaatcacgttaatgaacttgttcaaggaatcatcgaaggcgagacacgtgtcctcgttgc 49208733  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||| ||| | ||||||||||| |||| ||||    
49208732 ttcaatgacgatggaagaggttttcagaggaacaaaagaatttaaacaagaagtattcgacaaagttcaacttgaattgaaccaattcggattatggatt 49208633  T
322 tacaatgctaatgttaa 338  Q
    ||||| || ||||||||    
49208632 tacaacgccaatgttaa 49208616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 49203756 - 49203441
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||| ||||||||||| ||||| || ||||||||||||||||||||||| || || |||||||| ||||||||||| || ||| ||||||||||||    
49203756 tacaccttcgaagttcaagctatgagtgccgagaaacttccttttgttctccctgccgttttcactattggtcctcgtgttgacgatcaggaaagccttc 49203657  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    ||||||||||||||||||||||||| || |||  |||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||| || |||||    
49203656 tcaaatacgccaaacttatttcaccacatgatcgactctccaatcatgttaatgaacttgttcaaggaatcattgaaggggaaacacgtgtactggctgc 49203557  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || ||||||||||| ||||||||||||||||| ||| |||||||||||||| |||| |  ||||||||||| ||  | || |||||||| |||||||||    
49203556 ttccatgaccatggaggaggttttcagaggaacgaaacagtttaaacaagaa-tattcgacaaagttcaacttgagttgaatcaattcggattattgatt 49203458  T
322 tacaatgctaatgttaa 338  Q
    |||||||| ||||||||    
49203457 tacaatgcaaatgttaa 49203441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 350
Target Start/End: Original strand, 29622865 - 29623084
Alignment:
131 ccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgac 230  Q
    ||||||| ||||| || |||||||||||||| ||||| || || ||||| ||||| |||| ||||||||| ||||||| ||||||||| || || |||||    
29622865 ccaaactaatttccccacacgataaactctcaaatcacgtcaatgaacttgttcagggaaacatcgaaggtgagacacatgtcctcgcagcttccatgac 29622964  T
231 catggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttacaatgct 330  Q
     |||||||||||||| ||||||||| ||||||||||||||||||||||    |||||||||| | |||| || |||||||  ||||||||||||||||      
29622965 tatggaagaggtttttagaggaacagaagagtttaaacaagaagtattcaagaaagttcaacacaaactgaatcaattcgagttattgatttacaatgtg 29623064  T
331 aatgttaaacagttagttga 350  Q
    ||||| ||||| || |||||    
29623065 aatgtcaaacaattggttga 29623084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 37031430 - 37031114
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
37031430 tacaccttcgaagttcaagctatgagcgcggagaaacttccttttgttctccccgctgtcttcactattggtcctcgtgtggatgataaggaaagccttc 37031331  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    |||||||||||||||||||||||||||| | || || ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
37031330 tcaaatacgccaaacttatttcaccgcatgctagacactccaatcatgttaatgaacttgttcaaggaatcatcgaaggggagacacgtgtcctcgctgc 37031231  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||| ||  | || |||||||| |||||||||    
37031230 ttccatgacgatggaggaggttttcagaggaacaaaacagtttaaacaagaagtattcgacaaagttcaacttgagttgaatcaattcggattattgatt 37031131  T
322 tacaatgctaatgttaa 338  Q
    |||||||| ||||||||    
37031130 tacaatgcgaatgttaa 37031114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 338
Target Start/End: Original strand, 32591897 - 32592210
Alignment:
25 acctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttctca 124  Q
    ||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||||||||| || ||||||||||| |||||| |||||||||| ||||    
32591897 accttcgaagttcaagccatgagtgctgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgatgatcaggaaagcctcctca 32591996  T
125 aatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatc 224  Q
    ||||||| ||||| ||||| || || ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||    
32591997 aatacgctaaactgatttcccctcatgataaactctcgaatcatgtcaaggaactcgttcaaggaatcattgaaggggagacacgtgtcctcgctgcttc 32592096  T
225 aatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatttac 324  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||    
32592097 gatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtattcgagaaagttcaactcgaactaaaccaattcgggttattgatttac 32592196  T
325 aatgctaatgttaa 338  Q
    ||||| ||||||||    
32592197 aatgcgaatgttaa 32592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 31528037 - 31527721
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||||||||| || ||||||||||| || ||| |||||||||| |    
31528037 tacaccttcgaagttcaagccatgagtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcc 31527938  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    |||||||||| ||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
31527937 tcaaatacgctaaactgatttcccctcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgc 31527838  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||    |||||||||||||||||||||||||| || |||||||||    
31527837 ttcgatgaccatggaagaagttttcagaggaacaaaagagtttaaacaagaaatattcaagaaagttcaactcgaactaaaccaatttgggttattgatt 31527738  T
322 tacaatgctaatgttaa 338  Q
    |||||||| ||||||||    
31527737 tacaatgcgaatgttaa 31527721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 51825440 - 51825124
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| || || |||||||| || ||||||||||| || ||| | |||||||| |    
51825440 tacaccttcgaagttcaagccatgagtgccgaaaaactgcctttcgttcttcctgcggtcttcacaattggtcctcgtgttgacgatcacgaaagcctcc 51825341  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    |||||||||| ||||| ||||| || || ||||||||||| || || || ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
51825340 tcaaatacgctaaactgatttcccctcatgataaactctcgaaccacgtcaaggaactcgttcaaggaatcattgaaggtgagacacgtgtcctcgctgc 51825241  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||  | || |||||||| |||||||||    
51825240 ttcgatgaccatggaagaggttttcaaaggaacaaaagagtttaaacaagaagtattcgagaaagttcaactcgagttgaatcaattcggattattgatt 51825141  T
322 tacaatgctaatgttaa 338  Q
    |||||||| ||||||||    
51825140 tacaatgcgaatgttaa 51825124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 26757298 - 26756982
Alignment:
22 tacacctttgaagttcaagcaatgagcgcagagaaacttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttc 121  Q
    ||||||||  |||||||||||||||| || || ||||| || || |||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||    
26757298 tacaccttcaaagttcaagcaatgagtgctgaaaaactcccattcgttctccccgctgtgttcactataggtcctcgtgtggacgatcatgaaagccttc 26757199  T
122 tcaaatacgccaaacttatttcaccgcacgataaactctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgc 221  Q
    |||||||||||||||| ||||||| ||| |||| || ||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
26757198 tcaaatacgccaaactaatttcacagcatgatagacactccaatcacgttaatgaacttgttcaaggaatcatcgaaagcgagacacgtgtcctcgctgc 26757099  T
222 atcaatgaccatggaagaggttttcagaggaacaaaagagtttaaacaagaagtatttggaaaagttcaactcgaactaaaccaattcggtttattgatt 321  Q
     || ||||| ||||||||||| |||||||||||||||||||||| | ||||||||||    ||||||||||||||||| ||  | ||||| |||||||||    
26757098 ttccatgactatggaagaggtcttcagaggaacaaaagagtttataaaagaagtattcaagaaagttcaactcgaactgaattagttcgggttattgatt 26756999  T
322 tacaatgctaatgttaa 338  Q
    |||||||  ||||||||    
26756998 tacaatgtgaatgttaa 26756982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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