View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_low_13 (Length: 340)

Name: NF7461_low_13
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_low_13
NF7461_low_13
[»] chr8 (1 HSPs)
chr8 (10-340)||(42210045-42210375)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 42210375 - 42210045
Alignment:
Q  10 acctgtggccttgattgagttccacactcatgccggcaggcatctctaattttacacattgagggaaaatatcaaaatataacttggcaatactatactt 109  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42210375 acctctggccttgattgagttccatactcatgccggcaggcatctctaattttacatattgagggaaaatatcaaaatataacttggcaatactatactt 42210276  T
Q  110 ttaccctctaacataagataaattacgagcttactaaagtaaaattggatcacaccgatcattctgcgacnnnnnnncacaggcatgtaatgcctctgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  42210275 ttaccctctaacataagataaattacgagcttactaaagtaaaattggatcacaccgatcattctgcgacaaaaaaacacaggcatgtaatgcctctgat 42210176  T
Q  210 ataacatggggctcttcatcaacattgctgatctcaatatgtcaattcactatttgtttgttacttcatgaacattgactgatttctggtttttgtgcag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42210175 ataacatggggctcttcatcaacattgctgatctcaatatgtcaattcactatttgtttgttacttcatgaacattgactgatttctggtttttgtgcag 42210076  T
Q  310 ccaatcaaatattgtcctttttacaagaccc 340  Q
    |||||||||||||||||||||||||||||||    
T  42210075 ccaatcaaatattgtcctttttacaagaccc 42210045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University