View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_15 (Length: 326)
Name: NF7461_low_15
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 34353140 - 34353436
Alignment:
| Q |
13 |
acctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagt |
112 |
Q |
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| T |
34353140 |
acctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagt |
34353239 |
T |
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| Q |
113 |
ggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattatt |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34353240 |
ggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcacataacattatt |
34353339 |
T |
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| Q |
213 |
aaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
309 |
Q |
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| T |
34353340 |
aaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
34353436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 34358765 - 34359061
Alignment:
| Q |
13 |
acctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtggagctgaaagagt |
112 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||| |
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| T |
34358765 |
acctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtggagctgaaacagt |
34358864 |
T |
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| Q |
113 |
ggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgcttgttgagaattctcagatcacataacattatt |
212 |
Q |
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|| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
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| T |
34358865 |
ggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccattgttgtttgttgagaattctcagatcacataacattgtt |
34358964 |
T |
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| Q |
213 |
aaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagat |
309 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| | || |||||||||| |
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| T |
34358965 |
aaaagaagataaggtacacgcacgaaatgcacaagatcatggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagat |
34359061 |
T |
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