View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_17 (Length: 318)
Name: NF7461_low_17
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 36949768 - 36950063
Alignment:
| Q |
1 |
atgcacgtatgctacctggagaaaataacacaccattttgacgataatgttaatcattactaacattgttgacctatatatataacacacttaagaatcc |
100 |
Q |
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| T |
36949768 |
atgcacgtatgctacctggagaaaataacacaccattttgacgataatgttaattattactaacattgttgacctatatatataacacacttaagaatcc |
36949867 |
T |
|
| Q |
101 |
ttttcaagcaaaatatatgcaacaaaccaagggggcatagatgggaagggagaaaaaacataccatgtgtctattgacattaataagctgctgcatatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
36949868 |
ttttcaagcaaaatatatgcaacaaaccaagggggcatagatgggaagggagaaaaaacataccatgtgtctattgacattaataa---ggtgcatatgt |
36949964 |
T |
|
| Q |
201 |
gatctactaggcattccatgtaacatatattgttctgccaccgaaatagtgttcactgtgtcagtgaacccatttataaatggctgctgctcatcgtgc |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36949965 |
gatctactaggcattccatgtaacatatatggttctgccaccgaaatagtgttcactgtgtcagtgaacccgtttataaatggctgctgctcatcgtgc |
36950063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 10818210 - 10818104
Alignment:
| Q |
110 |
aaaatatatgcaacaaaccaagggggcatagatgggaagggagaaaaaacataccatgtgtctattgacattaataagctgctgcatatctgatctacta |
209 |
Q |
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|||||||||||||||| | ||||||||| ||||| |||||||||| |||||||||||||||||| |||||||| | | ||||||| |||||||||| |
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| T |
10818210 |
aaaatatatgcaacaatcgaagggggcaaagatgagaagggagaataaacataccatgtgtctagtgacattattgtcacgttgcatatgtgatctacta |
10818111 |
T |
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| Q |
210 |
ggcattc |
216 |
Q |
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||||||| |
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| T |
10818110 |
ggcattc |
10818104 |
T |
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