View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_low_18 (Length: 307)

Name: NF7461_low_18
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_low_18
NF7461_low_18
[»] chr5 (6 HSPs)
chr5 (1-64)||(12749653-12749716)
chr5 (1-64)||(12812745-12812808)
chr5 (1-64)||(12812676-12812739)
chr5 (1-54)||(12812607-12812660)
chr5 (1-64)||(12749584-12749647)
chr5 (1-42)||(12749515-12749556)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12749653 - 12749716
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12749653 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 12749716  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12812745 - 12812808
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12812745 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 12812808  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12812676 - 12812739
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 64  Q
    ||||||||| |  |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  12812676 agagcatggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggctatggtggt 12812739  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12812607 - 12812660
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggagg 54  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||    
T  12812607 agagcatggtgattctggctatggaggtggtgaaggaggtggggctggaggagg 12812660  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12749584 - 12749647
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 64  Q
    ||||||||| |  |||||||||||||||||  |||||||||||||||||||||| |||||||||    
T  12749584 agagcatggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggttatggtggt 12749647  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12749515 - 12749556
Alignment:
Q  1 agagcatggtgcttctggctacggaggtggtgaaggaggtgg 42  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  12749515 agagcatggtgattctggctatggaggcggtgaaggaggtgg 12749556  T

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