View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_2 (Length: 720)
Name: NF7461_low_2
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 45583951 - 45584409
Alignment:
| Q |
19 |
catatcatgtttcagaatggctgataccttacaatcgttgatggtgatagtatatattcattcaatatagacttattcactaccactcagtcgacagtgt |
118 |
Q |
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| T |
45583951 |
catatcatgtttcagaatggctgataccttacaatcgttgatggtgatagtatatattcattcaatatagacttattcactaccactcagtcgacagtgt |
45584050 |
T |
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| Q |
119 |
cgttgatgttgatacgacacggtttcagttgaatgataaaagaaactaaatatgaaaccaaaaatcttgtttcttttttcctttgcaacatttaaagcaa |
218 |
Q |
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| T |
45584051 |
cgttgatgttgatacgacacggtttcagttgaatgataaaagaaactaaatatgaaaccaaaaatcttgtttcttttttcctttgcaacatttaaagcaa |
45584150 |
T |
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| Q |
219 |
ccatttgtctagatatagcttttttatcaactactctgcactgagagtctcaaaatttgtcatatatgtaaataaataaaggtttggaataaggaatgtg |
318 |
Q |
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| T |
45584151 |
ccatttgtctagatatagcttttttatcaactactctgcactgagagtctcaaaatttgtcatatatgtaaataaataaagggttggaataaggaatgtg |
45584250 |
T |
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| Q |
319 |
aaagatatatacacacgtatgtacgggaactaatccttctctaaagttcaagccaaaatgtgcataatgatatgtcaaattcttggcaactcaattaagt |
418 |
Q |
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| T |
45584251 |
aaagatatatatacacgtaagtacgggaactaatccttctctaaagttcaagccaaaatgtgcataatgatatgtcaaattcttggcaactcaattaagt |
45584350 |
T |
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| Q |
419 |
aactagtatttggattacctgcatttgaatttttaatttttcatacctttgtgcataat |
477 |
Q |
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| T |
45584351 |
aactagtatttggattacctgcatttgaatttttaatttttcatacctttgtgcataat |
45584409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 474 - 557
Target Start/End: Original strand, 45584434 - 45584517
Alignment:
| Q |
474 |
taattaatattctgcagttcaatgatatgagttgagatgccgaatattaagaaggagatctaaggatcccatgtcgcttgcaaa |
557 |
Q |
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| T |
45584434 |
taattaatattctgcagttcaatgatatgagttgagatgccgaatgttaagaaggagatctaagaatcccatgtcgcttgcaaa |
45584517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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