View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_24 (Length: 283)
Name: NF7461_low_24
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 29206043 - 29206335
Alignment:
| Q |
1 |
atgtaaagatccttaatcaaaggacacaaaaaacacgattcatctttattatttgtgacaaagaatacatnnnnnnnnnnnnnnnnntctcgccgtctaa |
100 |
Q |
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| T |
29206043 |
atgtaaagatccttaatcaaaggacacaaaaaacacgattcatctttattatttgtgacaaagaatacataaaaaaaaataaaaaaatctcgccgtctaa |
29206142 |
T |
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| Q |
101 |
ttaagtggagctaggctatatggtacaaaagctctcaagttttctctctatggcat----------------aacatgcatgaaattaatgtgacattat |
184 |
Q |
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| T |
29206143 |
ttaagtggagctaggctatatggtacaaaagctcttaagttttctctctatggcatggcatggatagtgtacaacatgcatgaaattaatgtgacattat |
29206242 |
T |
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| Q |
185 |
agatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgc |
277 |
Q |
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| T |
29206243 |
agatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgc |
29206335 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 38379783 - 38379728
Alignment:
| Q |
222 |
aatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgc |
277 |
Q |
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| T |
38379783 |
aatggagttgttgagagtttgatgaccacattggtcaatgttgtagaatccattgc |
38379728 |
T |
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