View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7461_low_3 (Length: 593)
Name: NF7461_low_3
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 120 - 580
Target Start/End: Complemental strand, 11901773 - 11901312
Alignment:
| Q |
120 |
taagccaagtcaaagatatagacaaaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacacctt |
219 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11901773 |
taagccatgtcaaagatatagaccgaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcacacctt |
11901674 |
T |
|
| Q |
220 |
gtctaactggctccattccatccaatgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctc |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901673 |
gtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctc |
11901574 |
T |
|
| Q |
320 |
aaggttctccaacttcggagactggactctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnnnnnc |
418 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
11901573 |
aaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctactaccccaatattgttttttc |
11901474 |
T |
|
| Q |
419 |
catccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatttc |
518 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901473 |
catccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgcatttc |
11901374 |
T |
|
| Q |
519 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatg |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901373 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatg |
11901312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 146 - 580
Target Start/End: Original strand, 12039554 - 12039989
Alignment:
| Q |
146 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
245 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||| || ||| | || | |
|
|
| T |
12039554 |
aagtcgcttgactgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcatt |
12039653 |
T |
|
| Q |
246 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
345 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
12039654 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttgga |
12039753 |
T |
|
| Q |
346 |
ctctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnnnnnccatccttgaaggaacttacaatctcg |
444 |
Q |
| |
|
||| ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
12039754 |
ctcactgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaatattattttttccatccttgaaggaacttacaatctcg |
12039853 |
T |
|
| Q |
445 |
gattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatttcaaaactaaacatccaatgttgtccta |
544 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||| |||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||||| ||| || | |
|
|
| T |
12039854 |
gattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatttccaaactaaatgtccaatattgcccca |
12039953 |
T |
|
| Q |
545 |
aattagcttgcatgcctctatatcctggtcttgatg |
580 |
Q |
| |
|
| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
12039954 |
agttagcttgcatgccactatatcctaatcttgatg |
12039989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 151 - 362
Target Start/End: Original strand, 11828659 - 11828870
Alignment:
| Q |
151 |
gcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtctt |
250 |
Q |
| |
|
|||||||||||| |||||||||| ||| || || |||||| |||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||| |
|
|
| T |
11828659 |
gcttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgcctt |
11828758 |
T |
|
| Q |
251 |
gttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctc |
350 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11828759 |
gttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctt |
11828858 |
T |
|
| Q |
351 |
tgaaattcattg |
362 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11828859 |
tgaaatttattg |
11828870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 155 - 362
Target Start/End: Original strand, 11860795 - 11861002
Alignment:
| Q |
155 |
gattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgtta |
254 |
Q |
| |
|
|||||||| |||||||||| |||| ||| || |||||| |||| |||||| |||| |||| |||||||| |||||| ||| | |||| |||| || |
|
|
| T |
11860795 |
gattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggta |
11860894 |
T |
|
| Q |
255 |
agtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctctgaa |
354 |
Q |
| |
|
| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
11860895 |
aatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaa |
11860994 |
T |
|
| Q |
355 |
attcattg |
362 |
Q |
| |
|
|||||||| |
|
|
| T |
11860995 |
attcattg |
11861002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 418 - 580
Target Start/End: Original strand, 11861038 - 11861200
Alignment:
| Q |
418 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
517 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| || || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
11861038 |
ccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcattt |
11861137 |
T |
|
| Q |
518 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatg |
580 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | ||||||| |||||| |||||||| |||||||||| |
|
|
| T |
11861138 |
caaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatg |
11861200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 418 - 580
Target Start/End: Original strand, 11828906 - 11829068
Alignment:
| Q |
418 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
517 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||| || ||| |||||||| ||||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
11828906 |
ccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcattt |
11829005 |
T |
|
| Q |
518 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatg |
580 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||||||||||||| || ||||| |||||||||| |
|
|
| T |
11829006 |
caaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatg |
11829068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 146 - 362
Target Start/End: Original strand, 11732458 - 11732674
Alignment:
| Q |
146 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
245 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||||| | |||||| ||||| |||||| |||| | |||| |
|
|
| T |
11732458 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgattcgcttcaat |
11732557 |
T |
|
| Q |
246 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
345 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| |||||||| |||| |
|
|
| T |
11732558 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
11732657 |
T |
|
| Q |
346 |
ctctctgaaattcattg |
362 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
11732658 |
atctcttgaattcattg |
11732674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 560
Target Start/End: Original strand, 11732735 - 11732876
Alignment:
| Q |
422 |
ccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatga---gatttggggtaatgatagaccatatttcagttgcatttc |
518 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||| || | | || | ||||||| |||| ||||||||| |
|
|
| T |
11732735 |
ccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcccttgcatttc |
11732834 |
T |
|
| Q |
519 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcc |
560 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
11732835 |
aaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University