View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7461_low_30 (Length: 249)
Name: NF7461_low_30
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6685110 - 6684876
Alignment:
| Q |
1 |
tgttaatgtattggtagtaggttcaactgggtatataggaaaatttgtagtgaaagagttgattcaaagagggtttaatgttactgcaatagctagagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685110 |
tgttaatgtattggtagtaggttcaactgggtatataggaaaatttgtagtgaaagagttgattcaaagagggtttaatgttactgcaatagctagagaa |
6685011 |
T |
|
| Q |
101 |
aagagtggaataaagggtagcattgataaagaaacaacattgaatgagttaagaggtgctaatgtgtgtttctctgatgtgacaaatttggatgtttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6685010 |
aagagtggaataaagggtagcattgataaagaaacaacattgaatgagttaagaggtgctaatgtgtgtttctctgatgtgacaaatttggatgtttttg |
6684911 |
T |
|
| Q |
201 |
atgaggatttgaagaacttaggtgttggttttgat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6684910 |
atgaggatttgaagaacttaggtgttggttttgat |
6684876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University