View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_33 (Length: 239)
Name: NF7461_low_33
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 50652156 - 50652374
Alignment:
| Q |
17 |
gacatggcctatgctgtgcaactccactaaagagatcgtgtgttcttcctcattcgtcaaatcaactagcgatgctaagaacagagaatgtgagtttatc |
116 |
Q |
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| T |
50652156 |
gacatggcctatggtgtgcaactccactaaaga--ttgtgtgttcttcctcattcgtcaaacgaactagtgatgctaagaacaaagaatgtgagtttatc |
50652253 |
T |
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| Q |
117 |
acattattgttcaatctccctatatgctcacttagttttgagttagttgtgtttagaaagaatcaaatatctcgttcgactgcttcaacatcacctaact |
216 |
Q |
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||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50652254 |
acattattgttcaatctccttatattctcactcagttttgagttagttgtgtttagaaagaatcaaatatctcgttcgactgcttcaacatcacctaact |
50652353 |
T |
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| Q |
217 |
ttcgttcgactgagagtttca |
237 |
Q |
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|||||||| |||||||||||| |
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| T |
50652354 |
ttcgttcggctgagagtttca |
50652374 |
T |
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