View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_34 (Length: 238)
Name: NF7461_low_34
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 49271529 - 49271719
Alignment:
| Q |
32 |
tacagttacacactgctcaaatcttgattattgctctgagcaaaagtggaagccttctgaaatctaacatagtaaggttcttcaataccatcaccaacag |
131 |
Q |
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| T |
49271529 |
tacagttacacactgctcaaatcttgattattgctctgagcaaaagtggaagccttctgaaatctaacatagtaaggttcttcaataccatcaccaacag |
49271628 |
T |
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| Q |
132 |
ccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagctatatat |
222 |
Q |
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| T |
49271629 |
ccataactttagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagctatatat |
49271719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 49277455 - 49277633
Alignment:
| Q |
41 |
acactgctcaaatcttgattattgctctgagcaaaagtggaagccttctgaaatctaacatagtaaggttcttcaataccatcaccaacagccataactt |
140 |
Q |
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| T |
49277455 |
acaccgctgaaatcttgattcttgttctgagtaaaagtggaagccttctgaaatctaacataataaggttcttcaataccagcaccaagagccataactt |
49277554 |
T |
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| Q |
141 |
tagttccatcagtatctacaaaagttccaacaggagcacaaagaacaccaggaacagagggacagaacttaaagctata |
219 |
Q |
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| T |
49277555 |
tagttccatcagtatctacaaaagttccaacaggagcacaaagagtaccaggaacagaaggacagtacagaaagctata |
49277633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 49269119 - 49269273
Alignment:
| Q |
73 |
aaaagtggaagccttctgaaatctaacatagtaaggttct---tcaataccatcaccaacagccataactttagttccatcagtatctacaaaagttcca |
169 |
Q |
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|||||||||| || ||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
49269119 |
aaaagtggaaaccctctgaaacctaacataataaggttcaagatcattaccatcaccaacagccataactttagttccatcggtatctgtgaaagttcga |
49269218 |
T |
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| Q |
170 |
acaggagcacaaagaacaccaggaacagagggacagaacttaaagctatatattg |
224 |
Q |
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| T |
49269219 |
acaggagcacataaagcaccaggaacagaaggacagaacttaaagatatagattg |
49269273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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