View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_39 (Length: 207)
Name: NF7461_low_39
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 2451303 - 2451156
Alignment:
| Q |
16 |
gacatcatgatgaaaattaaatatgataatcataacaacaaaatctttgattatttatattcaattcatagataaatttgttgtaaacctaacatattta |
115 |
Q |
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| T |
2451303 |
gacatcatgatgaaaattaaatatgataatcataacaacaaaatctttgattatttatattcaattcatagataaatttgttgtaaacctaacaaattta |
2451204 |
T |
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| Q |
116 |
agtcaaataaactttcttatttatgtcgaattgggtacaatgcaggtt |
163 |
Q |
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| T |
2451203 |
agtcaaataaactttcttatttatgtcgaattgggtacaatgcaggtt |
2451156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 2462330 - 2462166
Alignment:
| Q |
16 |
gacatcatgatgaaaattaaatatgataatcataacaacaaaatctttgattatttatattcaattcatagataaatt------------------tgtt |
97 |
Q |
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| T |
2462330 |
gacatcatgatgaaa-ttaaatatgataatcataacaacaaaaactttgtttatttatatgcaattcattgatatattaatcataacaacaaattttgtt |
2462232 |
T |
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| Q |
98 |
gtaaacctaacatatttaagtcaaataaactttcttatttatgtcgaattgggtacaatgcaggtt |
163 |
Q |
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| T |
2462231 |
gtacacctgacatatttaagtcaaataaactttcttatttatgtcaaattgggtgcaatgcaggtt |
2462166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 2446473 - 2446379
Alignment:
| Q |
67 |
tatttatattcaattca-tagataaatttgttgtaaacctaacatatttaagtcaaataaactttcttatttatgtcgaattgggtacaatgcag |
160 |
Q |
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| T |
2446473 |
tatttatattcaattcagtggaataatttgttggacacctaacaaattttagtcaaataaactttcttatttatgtagaatcgggtccaatgcag |
2446379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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