View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7461_low_4 (Length: 558)

Name: NF7461_low_4
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7461_low_4
NF7461_low_4
[»] chr8 (4 HSPs)
chr8 (13-484)||(41733818-41734293)
chr8 (483-539)||(41734937-41734993)
chr8 (305-346)||(3681628-3681669)
chr8 (306-346)||(45261444-45261484)
[»] chr5 (3 HSPs)
chr5 (304-346)||(28581186-28581228)
chr5 (306-344)||(2263711-2263749)
chr5 (304-345)||(27651552-27651593)
[»] chr6 (2 HSPs)
chr6 (301-345)||(9408334-9408378)
chr6 (306-346)||(11713666-11713706)
[»] chr7 (1 HSPs)
chr7 (306-353)||(22062427-22062474)
[»] chr4 (4 HSPs)
chr4 (311-346)||(22050244-22050279)
chr4 (304-345)||(41897575-41897616)
chr4 (312-345)||(53807430-53807463)
chr4 (306-346)||(17872090-17872130)
[»] chr3 (2 HSPs)
chr3 (302-345)||(51772888-51772931)
chr3 (304-345)||(552172-552213)
[»] chr2 (1 HSPs)
chr2 (308-345)||(7772482-7772519)
[»] scaffold0999 (1 HSPs)
scaffold0999 (306-346)||(2178-2218)
[»] chr1 (1 HSPs)
chr1 (305-345)||(43843890-43843930)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Original strand, 41733818 - 41734293
Alignment:
Q  13 tggtgttggggaaaataaattagttgaaggatgcacaatagtgacttgtggttggttgaaggtgtgatgctcgagtgatagtgagtgtaaagaatggtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  41733818 tggtgttggggaaaataaattagttgaaggatgcacaatagtgacttgtggttggttgaaggtgtgatactcgagtgatggtgagtgtaaaggatggtgg 41733917  T
Q  113 aatatgagggatggttttagagactttagaaaggactaaatctaggtaaaaaattaagaacgaaatttaaattttgagctcgtaacaaattgagaatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41733918 aatatgagggatggttttagagactttagaaaggactaaatctaggtaaaaaattaagaactaaatttaaattttgagctcgtaacaaattgagaatttt 41734017  T
Q  213 attggaacaaaaattagatttaacctaataatatttgggccgtacgtagcacatacacaattgccacgttaaatgggtagttcacac------gtttttg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||    
T  41734018 attggaacaaaaattagatttaacctaataatatttgggccgtacgtagcacatacacaattgccacgttaaatgggtagttcacacgtttttgtttttg 41734117  T
Q  307 tgagcttaacttaattggtaaggatattgcataatatataatatatgtaggaatcaggttttgaacctcgaacatcccacttatttgttttaaaaaggta 406  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||| |||    
T  41734118 tgagcttaacttaattggtagggatattgcataatatataatatatataggaatcgggttttgaacctcggacaccccacttatttgttttaaaaaagta 41734217  T
Q  407 aattgtttatagctagactaaattcgaccaaaaaattcacctaatgatnnnnnnnncggatagttgcaaacataattt 484  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  41734218 aattgtttataactagactaaattcgaccaaaaaattcacctaatgat--aaaaaacggatagttgcaaacataattt 41734293  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 41734937 - 41734993
Alignment:
Q  483 ttcatccacgtctgcccctccctaaattcgtcgcagacaatgatgtcatatatctcc 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41734937 ttcatccacgtctgcccctccctaaattcgtcgcagacaatgatgtcatatatctcc 41734993  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 3681628 - 3681669
Alignment:
Q  305 tgtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  3681628 tgtgagcttatcttaattggtaaggataattcataatatata 3681669  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 45261484 - 45261444
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    |||||| ||||| |||||||| |||||||||||||||||||    
T  45261484 gtgagcataactcaattggtagggatattgcataatatata 45261444  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 28581186 - 28581228
Alignment:
Q  304 ttgtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  28581186 ttgtgagcttaacttaattggtagggatattgcatattatata 28581228  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 2263711 - 2263749
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatata 344  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  2263711 gtgagcttaacttaattggtaagaacattgcataatata 2263749  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 27651593 - 27651552
Alignment:
Q  304 ttgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    |||||||||||||||| |||||||||| | ||||||||||||    
T  27651593 ttgtgagcttaacttagttggtaaggacaatgcataatatat 27651552  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 9408334 - 9408378
Alignment:
Q  301 tttttgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    |||| ||||| |||||||||||||||| |||||||||||||||||    
T  9408334 ttttcgtgagtttaacttaattggtaaagatattgcataatatat 9408378  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 11713666 - 11713706
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    |||||||||| | |||||||||||||| |||||||||||||    
T  11713666 gtgagcttaaatcaattggtaaggataatgcataatatata 11713706  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 22062474 - 22062427
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatatataatatatg 353  Q
    |||||||||||| |||||||||||| | | ||||||||||||||||||    
T  22062474 gtgagcttaactcaattggtaaggacaatacataatatataatatatg 22062427  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 22050244 - 22050279
Alignment:
Q  311 cttaacttaattggtaaggatattgcataatatata 346  Q
    |||||||||||||||| |||||||||||||||||||    
T  22050244 cttaacttaattggtagggatattgcataatatata 22050279  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Complemental strand, 41897616 - 41897575
Alignment:
Q  304 ttgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    ||||||| |||||||| |||||| ||||||||||||||||||    
T  41897616 ttgtgagattaacttagttggtagggatattgcataatatat 41897575  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 53807430 - 53807463
Alignment:
Q  312 ttaacttaattggtaaggatattgcataatatat 345  Q
    |||||||||||| |||||||||||||||||||||    
T  53807430 ttaacttaattgataaggatattgcataatatat 53807463  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 17872090 - 17872130
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    ||||||||| ||||||||||| |||||||||||| ||||||    
T  17872090 gtgagcttagcttaattggtagggatattgcatagtatata 17872130  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 51772888 - 51772931
Alignment:
Q  302 ttttgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    |||||||||||||||||| |||||| |||||||||||| |||||    
T  51772888 ttttgtgagcttaacttagttggtagggatattgcatattatat 51772931  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 552172 - 552213
Alignment:
Q  304 ttgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    |||||||||||||| | |||||| ||||||||||||||||||    
T  552172 ttgtgagcttaactcagttggtagggatattgcataatatat 552213  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 7772519 - 7772482
Alignment:
Q  308 gagcttaacttaattggtaaggatattgcataatatat 345  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  7772519 gagcttaactcaattggtaaggataatgcataatatat 7772482  T

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Target: scaffold0999 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 2178 - 2218
Alignment:
Q  306 gtgagcttaacttaattggtaaggatattgcataatatata 346  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  2178 gtgagtttaacttaattggtagggatattacataatatata 2218  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 43843890 - 43843930
Alignment:
Q  305 tgtgagcttaacttaattggtaaggatattgcataatatat 345  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  43843890 tgtgagcttaacttagttggtaaggacaatgcataatatat 43843930  T

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