View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_5 (Length: 486)
Name: NF7461_low_5
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 42917948 - 42918395
Alignment:
| Q |
18 |
cgttgtttgatgtattctgccataagaaactgagacgtacttaaacaagcacacttagtttgataaatgaacctacttggtgtctttgctgctatgttaa |
117 |
Q |
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| T |
42917948 |
cgttgtttgatgtattctgccataagaaactgagacgtacttaaacaagcacacttagtttgataaatgaacctacttggtgtctttgctgctatgttaa |
42918047 |
T |
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| Q |
118 |
ttttaagttggtgcaatgggcttcaagaaagatatacaactatgatcaaagattttaaggtctctaatagtgtcttttcgattatagcatgtgtaacgac |
217 |
Q |
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| T |
42918048 |
ttttaagttggtgcaatgggcttcaagaaagatatacaactatgatcaaagattttaaggtctctaatagtgtcttttcgattatagcatgtgtaacgac |
42918147 |
T |
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| Q |
218 |
tagaagtcatggatatatttacgggctagttgtaatgaactcttttacaatatcatatatctaaggtaatggttgtgtgaactcccttctgctacatgtg |
317 |
Q |
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| T |
42918148 |
tagaagtcatggatatatttacgggctagttgtaatgaactcttttacaatatcatatatctaaggtaatggttgtgtgaactcccttctgctacatgtg |
42918247 |
T |
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| Q |
318 |
cctgctgtcctttcttggtaaggtatgatatttttaaaatgtttcgcttactaagctaaagctgcagtccttctgtcttacacccaaaaagtgtggggta |
417 |
Q |
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| T |
42918248 |
cctgctgtcctttcttggtaaggtatgatatttttaaaatgtttcgcttactaagctgaagctgcagtctttctgtcttacacccaaaaagtgtggggta |
42918347 |
T |
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| Q |
418 |
agccttgtaagaccaagagaaactcaaaacaaccatacatataaatct |
465 |
Q |
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| T |
42918348 |
agccttgtaagaccaagagaaactcaaaacaaccatacatataaatct |
42918395 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 18034510 - 18034448
Alignment:
| Q |
132 |
aatgggcttcaagaaagatatacaactatgatcaaagattttaaggtctctaatagtgtctttt |
195 |
Q |
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| T |
18034510 |
aatgggcttcaagaatgatatacaactatgatcaaatagattaa-gtctctaataatgtctttt |
18034448 |
T |
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