View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7461_low_9 (Length: 405)
Name: NF7461_low_9
Description: NF7461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7461_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 14308361 - 14307984
Alignment:
| Q |
13 |
aatatacagtataatgctgctcaatggtatttgaatcctagagcatgtatatggtgtgtggatgtttgattttctgtcgctgatcttttt-caatttaaa |
111 |
Q |
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|||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||| |||||||| ||||||||| |
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| T |
14308361 |
aatatagagtataatgttgctcaatggtatttgaagcctagagcatgtatatggtgtgtggatgtttgattcttggttgctaatcttttttcaatttaaa |
14308262 |
T |
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| Q |
112 |
agcttgaaatcatcacaatcacttacttatttgacacaaatgttcaaa--acacaaaactcagtactcatttacatacatgtatattttctcatataccc |
209 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||| ||||| | | ||||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
14308261 |
agcttggaatcatcacaatcacttgcttatttgacacaaatgctcaaactatagaaaactcggtactcatttacatgtatgtat--tttctcatataccc |
14308164 |
T |
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| Q |
210 |
tttaacttgtatatcaagaaatcgatttttcttgtacgtaaatttctatagcaggacccttttggagttcaactacaaatttttatcatcttatgagtgt |
309 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||| |||| |||||||||||||||| |
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| T |
14308163 |
tttaacttgtatatcaagaaatcgattttgcttgtacgtaaatttctactacaggacccttttggaattcaacaacaatttttcatcatcttatgagtgt |
14308064 |
T |
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| Q |
310 |
caaaccaatagcagtgactataattgttgaagggagaccaaatttcaaatgactccagaaggttaatgtgtatgataggt |
389 |
Q |
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| T |
14308063 |
caaaccaatagcagtaactataatagttgaagggaggccaaatttcaaatgactccagaaggttaatgtgtatgataggt |
14307984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 119 - 389
Target Start/End: Original strand, 16399590 - 16399860
Alignment:
| Q |
119 |
aatcatcacaatcacttacttatttgacacaaatgttcaaaacac--aaaactcagtactcatttacatacatgtatattttctcatataccctttaact |
216 |
Q |
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| T |
16399590 |
aatcatcacaatcacttgcttatttgacacagac--tcaaaacaccgaaaactcggtactcatttacatatatgtatattttcacatataccctttaact |
16399687 |
T |
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| Q |
217 |
tgtatatcaagaaatcgatttttcttgtacgtaaatttctatagcaggacccttttggagttcaactacaaatttttatcatcttatgagtgtcaaacca |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16399688 |
tgtatatcaagaaatcgattttacttgtacgtaaatttctacaacagaaaccttttggagttcaacaacaaatttttatcatcttatgagtgtcaaacca |
16399787 |
T |
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| Q |
317 |
atagcagtgactataattgttgaagggagaccaaatttcaaatgactccagaaggttaatgtgtatgataggt |
389 |
Q |
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| T |
16399788 |
atagcagtgactataatagttgaagggaggccaaatttcaaatgactccagaaggttaatgtgtatgataggt |
16399860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 197 - 389
Target Start/End: Original strand, 16396881 - 16397074
Alignment:
| Q |
197 |
ttctcatataccctttaacttgtatatcaagaaatcgatttttcttgtacgtaaatttctatagcaggacccttttggagttcaactacaaatttttatc |
296 |
Q |
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| T |
16396881 |
ttctcatataccctttaacttgtatatcaagaaatcgattttacttgtaggtaaatttctacagaaagacccttttggagttcaacaacaaatttttatc |
16396980 |
T |
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| Q |
297 |
atcttatgagtgtc-aaaccaatagcagtgactataattgttgaagggagaccaaatttcaaatgactccagaaggttaatgtgtatgataggt |
389 |
Q |
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| T |
16396981 |
atcttatgagtgtcaaaaccaatagcagtgactataatagttgaagggaggccaaatttcaaataactccagaaggttaatgtgtatgataggt |
16397074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 15942883 - 15942726
Alignment:
| Q |
136 |
acttatttgacacaaatgttcaaaacac--aaaactcagtactcatttacatacatgtatattttctcatataccctttaacttgtatatcaagaaatcg |
233 |
Q |
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|||||||||||||||||| | ||||||| |||||| |||||||||||||||| ||||| ||||| || || |||||||||||||||||||||||||||| |
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| T |
15942883 |
acttatttgacacaaatgctgaaaacactgaaaactaagtactcatttacatatatgtaaattttgtcgtaaaccctttaacttgtatatcaagaaatcg |
15942784 |
T |
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| Q |
234 |
atttttcttgtacgtaaatttctatagcaggacccttttggagttcaactacaaattt |
291 |
Q |
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| T |
15942783 |
attttgcttgaatgtaaatttctgcaaaaggacccctttggagttcaacaacaaattt |
15942726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 15526961 - 15526862
Alignment:
| Q |
13 |
aatatacagtataatgctgctcaatggtatttgaatcctagagcatgtatatggtgtgtggatgtttgattttctgtcgctgatctttttcaatttaaaa |
112 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||| |||||||||||||| |
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| T |
15526961 |
aatataaagtatactcatgctcaatggtatttgaatcctagagcatgtatagggtgcgcagatgtttgattttctatcgctgat-attttcaatttaaaa |
15526863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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