View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7462_low_1 (Length: 581)

Name: NF7462_low_1
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7462_low_1
NF7462_low_1
[»] chr7 (3 HSPs)
chr7 (20-253)||(48323480-48323719)
chr7 (391-489)||(48325443-48325541)
chr7 (260-308)||(25589058-25589106)
[»] chr1 (6 HSPs)
chr1 (260-308)||(13031128-13031176)
chr1 (260-308)||(17557710-17557758)
chr1 (258-308)||(347112-347162)
chr1 (260-297)||(31626241-31626278)
chr1 (260-308)||(10663144-10663192)
chr1 (267-308)||(32344764-32344805)
[»] chr8 (3 HSPs)
chr8 (264-298)||(294454-294488)
chr8 (259-307)||(14842787-14842835)
chr8 (252-308)||(30966061-30966117)
[»] scaffold0010 (1 HSPs)
scaffold0010 (264-308)||(161310-161354)
[»] chr5 (3 HSPs)
chr5 (258-306)||(32337708-32337756)
chr5 (258-308)||(4509771-4509822)
chr5 (260-297)||(32661592-32661629)
[»] chr4 (3 HSPs)
chr4 (264-308)||(46676687-46676731)
chr4 (260-288)||(6989905-6989933)
chr4 (260-296)||(47434698-47434734)
[»] chr2 (2 HSPs)
chr2 (260-306)||(5137476-5137522)
chr2 (260-308)||(7252240-7252288)
[»] chr3 (1 HSPs)
chr3 (260-296)||(10694942-10694978)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 48323480 - 48323719
Alignment:
Q  20 acccaatccatcttcttccccagaatagtaacgtagaactcgtcggtaaatcacatatccaagcta--tgtcaaataggaaaataattagttagcaattc 117  Q
    ||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  48323480 acccaatccatcttcttccccagaataataacggagcactcgtcgataaatcacatagccaagctaagtgtcaaataggaaaataattagttagcaattc 48323579  T
Q  118 aagcttgagaatc-agaaaatcctaatctaa--aagaaaacatatcctaatccaacaaatggaagtccatatcccatgatt-aagttatacattaaattc 213  Q
    |||||| ||| || | |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| ||||||| |||    
T  48323580 aagctttagactcaaaaaaatcctaatctaatgaagaaaacatatcctaatccaacgaatggaagtccatatctcctgattaaagttacacattaatttc 48323679  T
Q  214 ctaaaatattgataagtgatctgtaaattctcaataaaaa 253  Q
    |||||||||||||| || ||||||||| || |||||||||    
T  48323680 ctaaaatattgatatgtaatctgtaaactcccaataaaaa 48323719  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 48325443 - 48325541
Alignment:
Q  391 gaaaagtagagaatcattaccttttcatacatcttgatggctggtgcatttgatgctctcacaaatagatcaacaaagtatgctttgtcactgcaaaat 489  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  48325443 gaaaagtagagaatgattaccttttcatacatcttgatggctggtgcatttgatgctctcacaaatagatcaacaaaataggctttgtcactgaaaaat 48325541  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 25589058 - 25589106
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||||||||||||||||||||||||| |  ||||||| | |||||||||    
T  25589058 ttagaatttgggttggacctaactcagtattacaaaaccggcttgtaag 25589106  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 13031128 - 13031176
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  13031128 ttagaatttgggttggacctaactcaaccctacaaaaccagtttgtaag 13031176  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 17557710 - 17557758
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||    
T  17557710 ttagaatttgggttgggcctaactcaaccttacaaaatcagcttgtaag 17557758  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 347162 - 347112
Alignment:
Q  258 tattagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||||||||||||||||| |||||||||| | ||||||| |||||||||||    
T  347162 tattagaatttgggttggccctaactcaaccttacaaaaccagcttgtaag 347112  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 31626241 - 31626278
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaat 297  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31626241 ttagaatttgggttggacctaactcaaccctacaaaat 31626278  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 10663192 - 10663144
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    ||||||||||||||||||||||  ||||||||||||| || ||||||||    
T  10663192 ttagaatttgggttggacctaatgcaatcctacaaaaccaacttgtaag 10663144  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 32344764 - 32344805
Alignment:
Q  267 ttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||||||| ||||||||||| |||| ||||||||||||||||    
T  32344764 ttgggttgaacctaactcaaccctaaaaaatcagcttgtaag 32344805  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 294488 - 294454
Alignment:
Q  264 aatttgggttggacctaactcaatcctacaaaatc 298  Q
    |||||||||||||||||||||||||||||||||||    
T  294488 aatttgggttggacctaactcaatcctacaaaatc 294454  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 14842787 - 14842835
Alignment:
Q  259 attagaatttgggttggacctaactcaatcctacaaaatcagcttgtaa 307  Q
    |||||||||| ||||||||||||| |||  ||||||||||| |||||||    
T  14842787 attagaattttggttggacctaacacaacactacaaaatcaacttgtaa 14842835  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 30966061 - 30966117
Alignment:
Q  252 aaaccctattagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||| ||||||||||||||||||| ||||||||||   ||||||| | |||||||||    
T  30966061 aaacactattagaatttgggttgggcctaactcaaatttacaaaaccggcttgtaag 30966117  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 161310 - 161354
Alignment:
Q  264 aatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||    
T  161310 aatttggattggacctaactcaaccctacaaaataagcttgtaag 161354  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 32337756 - 32337708
Alignment:
Q  258 tattagaatttgggttggacctaactcaatcctacaaaatcagcttgta 306  Q
    |||||||||||||||||| |||||| ||||||||||||| | |||||||    
T  32337756 tattagaatttgggttgggcctaacacaatcctacaaaaccggcttgta 32337708  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 4509822 - 4509771
Alignment:
Q  258 tattagaatttgggttggacctaactcaa-tcctacaaaatcagcttgtaag 308  Q
    |||||||||||| ||||||||||||||||  ||||||||| |||||||||||    
T  4509822 tattagaatttgagttggacctaactcaacccctacaaaaccagcttgtaag 4509771  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 32661629 - 32661592
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaat 297  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  32661629 ttagaatttgggttgggcctaactcaatcttacaaaat 32661592  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 46676731 - 46676687
Alignment:
Q  264 aatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||    
T  46676731 aatttgggttggacctaactcaaccctacaaaaccatcttgtaag 46676687  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 6989933 - 6989905
Alignment:
Q  260 ttagaatttgggttggacctaactcaatc 288  Q
    |||||||||||||||||||||||||||||    
T  6989933 ttagaatttgggttggacctaactcaatc 6989905  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 47434734 - 47434698
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaa 296  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  47434734 ttagaatttgggttgaacctaactcaaccctacaaaa 47434698  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 5137522 - 5137476
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgta 306  Q
    ||||||||||||||||||| ||||||| | ||||||| |||||||||    
T  5137522 ttagaatttgggttggaccaaactcaaccgtacaaaaccagcttgta 5137476  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 7252288 - 7252240
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaatcagcttgtaag 308  Q
    |||||||||||||||  |||||||||| ||||||||| || ||||||||    
T  7252288 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 7252240  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 10694978 - 10694942
Alignment:
Q  260 ttagaatttgggttggacctaactcaatcctacaaaa 296  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  10694978 ttagaatttggattgaacctaactcaatcctacaaaa 10694942  T

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