View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7462_low_13 (Length: 213)
Name: NF7462_low_13
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7462_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 14353704 - 14353885
Alignment:
| Q |
14 |
ttggtgttgtggatactatcattactctatgggcaaaactaaaatatggtgatttgtctaagtatgggatttatcgtcccaaattaggacctttcaatct |
113 |
Q |
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| T |
14353704 |
ttggtgttgtggatactatcattactctatgggcaaaactaaaatatggtgatttgtctaagtatgggatttatcgtcctaaattgggacctttcaatct |
14353803 |
T |
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| Q |
114 |
taagaatgtgacaggaaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggtacttgat |
195 |
Q |
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| T |
14353804 |
taagaatgtgacaggaaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggtacttgat |
14353885 |
T |
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 43884176 - 43884004
Alignment:
| Q |
18 |
tgttgtggatactatcattactctatgggcaaaactaaaatatggtgatttgtctaagtatgggatttatcgtcccaaattaggacctttcaatcttaag |
117 |
Q |
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| T |
43884176 |
tgttgtggatgctatcattacttt-tcggcaaaactaaaatatggtgatttgtccaagtatgagatttatcgtcccaaattgggacctttacaactcaag |
43884078 |
T |
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| Q |
118 |
aatgtgacaggaaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggtact |
191 |
Q |
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| T |
43884077 |
aacgtgataggaaaatctgcagttattgattttggaaccatcgaaaagattaattagggatctataaaggtact |
43884004 |
T |
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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 12380891 - 12381060
Alignment:
| Q |
20 |
ttgtggatactatcattactctatgggcaaaactaaaatatggtgatttgtctaagtatgggatttatcgtcccaaattaggacctttcaatcttaagaa |
119 |
Q |
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| T |
12380891 |
ttgtggatacatacattactcttttggcaaaactaaaatatggtgatctgtctaaatatggaatttatcgtcccaaagagggacctttacatctcaaaaa |
12380990 |
T |
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| Q |
120 |
tgtgacaggaaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggta |
189 |
Q |
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| T |
12380991 |
tattacaggaaagtctgccgttattgatgttggaaccattggaaagattaaggagggtgctataaaggta |
12381060 |
T |
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