View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7462_low_2 (Length: 528)
Name: NF7462_low_2
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7462_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 32960221 - 32960686
Alignment:
| Q |
19 |
catacgaccaggaccacaacacaatgggaagaaatttaacatttggaatattatgggagtgacacatagttgaaaacatggcctgatttaattactctat |
118 |
Q |
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| T |
32960221 |
catacgaccaggaccacaacacattgggaagaaatttaacatttggaatattatgggagtgacacatagttgaaaacatggcctgatttaattactctat |
32960320 |
T |
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| Q |
119 |
taaattgtggttaaggattaaaggtaagtgtataccgttgttgattttggttaatgattcatggaagagattagatgaagtggcgtgacaccattcttgg |
218 |
Q |
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| T |
32960321 |
taaattgtggttaaggattaaaggtaagtgtataccgttgttgattttggttaatgattcatggaagagattagatgaagtggcgtgacaccattcttgg |
32960420 |
T |
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| Q |
219 |
ataattacattttataaagttgtttggttttgcttgttcgggttggttttgtgtataacttatcttaagctaattgattcggaaactgacccacaagatt |
318 |
Q |
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| T |
32960421 |
ataattacattttataaagttgtttggttttgcttgttcgggttggttttgtgtataacttatcttaagctaattgattcggaaactgacccacaagatt |
32960520 |
T |
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| Q |
319 |
atgatgtaattaacttctagtttaacaatgtcataacacttaagaagttattttttaaaacaaattttctaatgtgtgtaacatcaccattaatagttca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32960521 |
atgatgtaattaacttctagtttaacaatgtcataacacttaagaagttattttttaaaacaaattttctaatgtgtgtaacatcaccattaatagttca |
32960620 |
T |
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| Q |
419 |
ttactttttcgttataaattattcacttccaatatgttgggaagaaaatttagagaaacttctaag |
484 |
Q |
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| T |
32960621 |
ttactttttcgttataaattattcacttccaatatgttgggaagaaaatttagagaaacttctaag |
32960686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 510
Target Start/End: Original strand, 32961965 - 32961995
Alignment:
| Q |
480 |
ctaagactactcaagttaggagaaatcgaca |
510 |
Q |
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| T |
32961965 |
ctaagactactcaagttaggagaaatcgaca |
32961995 |
T |
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