View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7462_low_3 (Length: 465)

Name: NF7462_low_3
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7462_low_3
NF7462_low_3
[»] chr1 (18 HSPs)
chr1 (13-455)||(47774245-47774686)
chr1 (13-449)||(47770342-47770778)
chr1 (13-199)||(47744395-47744581)
chr1 (13-197)||(47711880-47712064)
chr1 (13-199)||(47716631-47716817)
chr1 (13-152)||(47758778-47758917)
chr1 (65-227)||(6524864-6525026)
chr1 (22-164)||(6511030-6511172)
chr1 (323-420)||(47759072-47759169)
chr1 (316-391)||(47712167-47712242)
chr1 (22-164)||(6515453-6515595)
chr1 (318-420)||(47716924-47717026)
chr1 (318-391)||(47744717-47744790)
chr1 (325-385)||(6515938-6515998)
chr1 (22-164)||(6503410-6503552)
chr1 (13-119)||(47689806-47689912)
chr1 (325-385)||(6511339-6511399)
chr1 (334-362)||(6524750-6524778)
[»] chr5 (10 HSPs)
chr5 (13-227)||(27369142-27369356)
chr5 (313-422)||(27369432-27369541)
chr5 (13-227)||(28829290-28829504)
chr5 (312-421)||(28829753-28829862)
chr5 (13-227)||(28874896-28875110)
chr5 (13-164)||(28860326-28860477)
chr5 (318-421)||(28855459-28855562)
chr5 (13-199)||(28854967-28855153)
chr5 (318-387)||(28860665-28860734)
chr5 (332-375)||(28875242-28875285)
[»] scaffold0341 (2 HSPs)
scaffold0341 (22-164)||(12711-12852)
scaffold0341 (22-164)||(5092-5234)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 47774686 - 47774245
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||    
T  47774686 aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgat 47774587  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatcattcatccattagg 212  Q
    ||||||||||||||||||| || ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||    
T  47774586 gttgaagtttggctactaaaagtacttcatttttaaattccacatctccttggtcagaatctttggacaatcttttgaccgcaatcatttgtccattagg 47774487  T
Q  213 gagtttaccctgaaatatatcaattttaagtataatagattgtannnnnnncaacaataatattttgcgaaaggtgacactttgacgattaaaaaattgt 312  Q
    ||| || ||||||||||||||||||||||| |||||| ||||||       |||||||||| |||||| || ||||| ||||| | ||| |||||| |||    
T  47774486 gagcttgccctgaaatatatcaattttaagcataataaattgta-ttatttcaacaataatgttttgcaaatggtgaaacttttatgataaaaaaagtgt 47774388  T
Q  313 tatcttacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgca 412  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  47774387 tatcttacccgataaacaactccgaacccaccttgtccaagtttattagaatcggagaagtcacttgtagcaactcgtatggtatcaaagttaaattgca 47774288  T
Q  413 aagactcaacaatagtaatttcatcttcatcttcatcttcatc 455  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||    
T  47774287 aagactcgacaatcgtaatttcatcttcatcttcatctccatc 47774245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 47770778 - 47770342
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||  |||| ||||||||||||||||||||||| | ||||||||| |||||||    
T  47770778 aatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatttcgat 47770679  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatcattcatccattagg 212  Q
    ||||||| |||||||||||||  ||||||||||||||||| | |||||||||    ||||||||  |||||||||| || |||||||||  ||||| |||    
T  47770678 gttgaagcttggctactaataatacttcatttttaaattccacatctccttggctggaatcttttaacaatctttttacagcaatcatttgtccatcagg 47770579  T
Q  213 gagtttaccctgaaatatatcaattttaagtataatagattgtannnnnnncaacaataatattttgcgaaaggtgacactttgacgattaa--aaaatt 310  Q
     || || ||||||||||||| ||  |  |||| | || ||| |        | |  ||||||||||||  ||| ||| | ||| | || |||   ||||     
T  47770578 aagcttcccctgaaatatataaaggtatagtaaattatatttt--ttttttctatgataatattttgcagaagatgatattttcatgaataattgaaatg 47770481  T
Q  311 gttatcttacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattg 410  Q
    | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||||||||  ||||||| |||| |   ||||||||||||||||    
T  47770480 ggtatcttacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagcagctcggacgatatcaaagttaaattg 47770381  T
Q  411 caaagactcaacaatagtaatttcatcttcatcttcatc 449  Q
     || ||||||||||| || ||||||||||||||| ||||    
T  47770380 aaatgactcaacaattgttatttcatcttcatctgcatc 47770342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 47744395 - 47744581
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| | |||||   ||||||| ||||||| ||  |||||||||| ||||||||| |||||||    
T  47744395 aatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgat 47744494  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatca 199  Q
    ||||||| || || ||||| ||||||||||| |||||||| ||||| |||||  | |||| | | ||||| ||||||||||||||||    
T  47744495 gttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatca 47744581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 47711880 - 47712064
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    ||||| |||||||||||||||||||| | |||| ||||||| |||||||   ||||||| ||||||| ||  |||||||||| ||||||||| |||||||    
T  47711880 aatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgat 47711979  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaat 197  Q
    ||||||| || || ||||| ||||||||||| |||||||| ||||| |||||  | |||| | | ||||| |||||||| |||||    
T  47711980 gttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgactgcaat 47712064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 47716631 - 47716817
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    ||||| |||||||||||||||||||| | |||| ||||||| | |||||   ||||||| ||||||| ||  |||||||||| || |||||| |||||||    
T  47716631 aatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagacaaaaaccaagtagtcaaactaaatttcgat 47716730  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatca 199  Q
    ||||||| || || ||||| ||||||||||| |||||||| ||||| |||||  | |||| | | ||||| ||||||| ||||||||    
T  47716731 gttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgatcgcaatca 47716817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 47758778 - 47758917
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    ||||| |||||||||||||||||||| | |||||||||||||| |||||   ||||||| ||||| | ||  |||||||||| || |||||| |||||||    
T  47758778 aatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgat 47758877  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattc 152  Q
    ||||||| || || ||||| ||||||||||| ||||||||    
T  47758878 gttgaagcttagcgactaaaagcacttcattcttaaattc 47758917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 6525026 - 6524864
Alignment:
Q  65 tttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtttggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    ||||||| ||||||| || |||||||||||  |||||||||||||||||||||||||| || ||||| |  |||||||| |||||||||| |||||||||    
T  6525026 tttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctccttg 6524927  T
Q  165 atcagaatctttggacaatcttttgaccgcaatcattcatccattagggagtttaccctgaaa 227  Q
      |||||||  | ||||| ||||||||  |||||  |  |||||| |||||| ||||||||||    
T  6524926 gccagaatccctcgacaaccttttgacaccaatctcttgtccattggggagtctaccctgaaa 6524864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 6511030 - 6511172
Alignment:
Q  22 taatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtt 121  Q
    |||||||||||||||||   |||| | ||||| ||||| ||  ||||||| |||||||  | |||||| |||||||| ||||| ||||| ||||||||||    
T  6511030 taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaagtt 6511129  T
Q  122 tggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    | || ||||| |  |||||||| ||||| |||| |||||||||    
T  6511130 tagccactaaaaatacttcattcttaaactctagatctccttg 6511172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 47759072 - 47759169
Alignment:
Q  323 gataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgcaaagactca 420  Q
    ||||||||||||||||||| || ||||||||||||||||  || || |||| || |||||||||| |||  || |||||||| |||||||| ||||||    
T  47759072 gataaacaactccaaatcctccatgtccaagtttattagcttcagaaaagttacttgtagcaacttgtaatgtctcaaagttgaattgcaatgactca 47759169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 391
Target Start/End: Original strand, 47712167 - 47712242
Alignment:
Q  316 cttacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgta 391  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||  || || ||||  ||||||||||||||||    
T  47712167 cttacctgataaacaactccaaatccgccatgtccaagtttattagcttcagaaaagttccctgtagcaactcgta 47712242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 6515453 - 6515595
Alignment:
Q  22 taatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtt 121  Q
    |||||||||||||||||   |||| | || || ||||| ||  |||| ||||||||||  | |||||| |||||||||||||| ||||| ||||||||||    
T  6515453 taatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggcagaaaccgagtaatctaactaaatttcggtgttgaagtt 6515552  T
Q  122 tggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    | || |  || | ||| ||||| ||||| |||| |||||||||    
T  6515553 tagccaggaaaaacacctcattcttaaactctagatctccttg 6515595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 47716924 - 47717026
Alignment:
Q  318 tacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgcaaagac 417  Q
    |||| ||||||||| ||||||||| || ||||||||||||||||  || || |||| || ||||||||||||||  || || ||||| ||| |||| |||    
T  47716924 tacctgataaacaattccaaatccgccatgtccaagtttattagcttcagaaaagttacttgtagcaactcgtaatgtctcgaagttgaatagcaatgac 47717023  T
Q  418 tca 420  Q
    |||    
T  47717024 tca 47717026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 47744717 - 47744790
Alignment:
Q  318 tacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgta 391  Q
    |||| ||||||||||||||||||| || |||||||||||||||   || || |||| || ||||||||||||||    
T  47744717 tacctgataaacaactccaaatccgccatgtccaagtttattatcttcagaaaagttacttgtagcaactcgta 47744790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 6515938 - 6515998
Alignment:
Q  325 taaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaa 385  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||||| |||  ||||||||    
T  6515938 taaacaactccgaatcctccttgtccaagtttatcagaatctgagaaatcatttgtagcaa 6515998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 6503410 - 6503552
Alignment:
Q  22 taatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtt 121  Q
    |||||||||||||||||   |||| | ||||| | ||| ||  ||||||| |||||||  |  ||||| |||||||||||||  ||||  ||||||||||    
T  6503410 taatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtt 6503509  T
Q  122 tggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    | || ||||| | ||||||||| ||||| |||  |||||||||    
T  6503510 tagcaactaaaaacacttcattcttaaactctgaatctccttg 6503552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 47689912 - 47689806
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    ||||||| |||||||||||||||||| |  ||| | |||||||| || ||  |||||||   || ||||| |||||| |||| | ||||||| |||||||    
T  47689912 aatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgat 47689813  T
Q  113 gttgaag 119  Q
    |||||||    
T  47689812 gttgaag 47689806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 6511339 - 6511399
Alignment:
Q  325 taaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaa 385  Q
    |||||||  |||||||| |||| |||||||||||||||||| ||||| |||  ||||||||    
T  6511339 taaacaaacccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaa 6511399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 6524778 - 6524750
Alignment:
Q  334 ccaaatccaccttgtccaagtttattaga 362  Q
    |||||||||||||||||||||||||||||    
T  6524778 ccaaatccaccttgtccaagtttattaga 6524750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 27369142 - 27369356
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||| ||  ||||||||||||||| || |||||||||||  |||||||  |||||||    
T  27369142 aatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatttcgat 27369241  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatcattcatccattagg 212  Q
    ||||||||||||||||||| || |||||||||||||| || | ||||||||| ||||||| | | ||||| ||||| || ||||||||    |||||| |    
T  27369242 gttgaagtttggctactaaaagtacttcatttttaaactcaacatctccttggtcagaatttgttgacaaccttttcacagcaatcatatgcccattaag 27369341  T
Q  213 gagtttaccctgaaa 227  Q
     ||||||||||||||    
T  27369342 cagtttaccctgaaa 27369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 27369432 - 27369541
Alignment:
Q  313 tatcttacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgca 412  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||  ||||||||| ||||  ||||||||||||||||||    
T  27369432 tatcatacccgataaacaattccaaatccaccttgtccaagtttattagaattagagaaatcactcgtagcaacttgtatgatatcaaagttaaattgca 27369531  T
Q  413 aagactcaac 422  Q
    | ||||||||    
T  27369532 atgactcaac 27369541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 28829290 - 28829504
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| || |||||||||||||| | |||| ||||||| | ||| |   ||||||||||||| | | | |||||||| | ||||||||| ||||| |    
T  28829290 aatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatttcggt 28829389  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatcattcatccattagg 212  Q
    ||||||||||||| || ||  | ||||| || |||||||||| |||||||||| |||||| | |||| || ||||| |||||||||| |  ||||||||     
T  28829390 gttgaagtttggccaccaaacgtacttcgttcttaaattctagatctccttgaccagaatttatggataaccttttcaccgcaatcacttgtccattaga 28829489  T
Q  213 gagtttaccctgaaa 227  Q
    |||| ||||||||||    
T  28829490 gagtctaccctgaaa 28829504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 28829753 - 28829862
Alignment:
Q  312 ttatcttacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgc 411  Q
    |||||| ||| |||||||| |||||||||||||||| |||||||||||||||||  |||| |||  ||||||||||| |||||| ||||||||||||||     
T  28829753 ttatctcacctgataaacagctccaaatccaccttgcccaagtttattagaatcacagaaatcatttgtagcaactcttatagtgtcaaagttaaattgt 28829852  T
Q  412 aaagactcaa 421  Q
    || |||||||    
T  28829853 aatgactcaa 28829862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 28874896 - 28875110
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| || || ||||||||||| | || | ||||||| | ||| ||  ||||||||||||| | | | |||||||||| |||||| || || || |    
T  28874896 aatatgaagtagtctagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggt 28874995  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatcattcatccattagg 212  Q
    ||||||||||||| | ||| ||||||||||| ||||||||||||||||||||  ||||||   ||||||| ||||| || || ||| ||  ||||||||     
T  28874996 gttgaagtttggccattaaaagcacttcattcttaaattctatatctccttggccagaattcatggacaaccttttaacagcgatcgtttgtccattaga 28875095  T
Q  213 gagtttaccctgaaa 227  Q
    |||  ||||||||||    
T  28875096 gagcctaccctgaaa 28875110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 28860326 - 28860477
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| || |||||||||||||| | || | ||||||| | ||| ||  ||||||||||||| | | | |||||||||| ||||||||| || || |    
T  28860326 aatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaattccggt 28860425  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    ||||||||||||| | ||| ||||||||||| ||||| ||| ||||||||||    
T  28860426 gttgaagtttggccattaaaagcacttcattcttaaactctctatctccttg 28860477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 28855459 - 28855562
Alignment:
Q  318 tacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaactcgtatagtatcaaagttaaattgcaaagac 417  Q
    |||| |||||||| |||||||||| ||||  ||||||||||||||||| |||||||||  ||||||||||  || ||| |||||||| ||||| || |||    
T  28855459 tacctgataaacagctccaaatccgccttcgccaagtttattagaatcagagaagtcatttgtagcaacttttacagtgtcaaagttgaattgtaatgac 28855558  T
Q  418 tcaa 421  Q
    ||||    
T  28855559 tcaa 28855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 28854967 - 28855153
Alignment:
Q  13 aatatgaaataatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgat 112  Q
    |||||||| || |||||||||||||| | |||| ||||||| |  || ||  ||||||||||||| | | | ||||||||||| |||||||| ||| |||    
T  28854967 aatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaattttgat 28855066  T
Q  113 gttgaagtttggctactaatagcacttcatttttaaattctatatctccttgatcagaatctttggacaatcttttgaccgcaatca 199  Q
    |||||||||| || |  || |  | |||||| |||||||| | |||||||||  ||||||   ||||||| |||||||| |||||||    
T  28855067 gttgaagtttagccatcaagattaattcattcttaaattccagatctccttggccagaattcatggacaaccttttgacggcaatca 28855153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 28860665 - 28860734
Alignment:
Q  318 tacccgataaacaactccaaatccaccttgtccaagtttattagaatcggagaagtcacctgtagcaact 387  Q
    |||| |||| ||| |||||||||| ||||  ||||||||||||||||| |||||||||  ||||||||||    
T  28860665 tacctgatatacagctccaaatccgccttccccaagtttattagaatctgagaagtcatttgtagcaact 28860734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 28875242 - 28875285
Alignment:
Q  332 ctccaaatccaccttgtccaagtttattagaatcggagaagtca 375  Q
    |||||||||||||||  ||||||||||||||||| |||||||||    
T  28875242 ctccaaatccaccttccccaagtttattagaatcagagaagtca 28875285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 12711 - 12852
Alignment:
Q  22 taatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtt 121  Q
    |||||||||||||||||   |||| | ||||| ||||| ||  ||||||| |||||||  | |||||| |||||||| ||||| ||||| ||||||||||    
T  12711 taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaagtt 12810  T
Q  122 tggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    | || ||||| |  |||||||| ||||| |||| |||||||||    
T  12811 tagccactaa-aatacttcattcttaaactctagatctccttg 12852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 5092 - 5234
Alignment:
Q  22 taatcaagacttttatttgtaacatattcataaataagcagcttttctctcccttctaaactgaaaccaagtaatctaactaagtttcgatgttgaagtt 121  Q
    |||||||||||||||||   |||| | ||||| | ||| ||  ||||||| |||||||  |  ||||| |||||||||||||  ||||  ||||||||||    
T  5092 taatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtt 5191  T
Q  122 tggctactaatagcacttcatttttaaattctatatctccttg 164  Q
    | || ||||| | ||||||||| ||||| |||  |||||||||    
T  5192 tagcaactaaaaacacttcattcttaaactctgaatctccttg 5234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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