View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7462_low_5 (Length: 442)
Name: NF7462_low_5
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7462_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 32248479 - 32248901
Alignment:
| Q |
1 |
attccatctccttctacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248479 |
attccatctccttctacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgt |
32248578 |
T |
|
| Q |
101 |
tgaaattcaatttgtattactatcaaggtgtatcaaagatgacttctttacaaagttatagaa---ttcaactcttttgagtttggtcttgttgttgcta |
197 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
32248579 |
tgaaattcaatttgtattactatcaa----------agatgacttctttacaaagttatagaaatattgaactcttttgagtttggtcttgttgttgcta |
32248668 |
T |
|
| Q |
198 |
gttttgttattgaattgcactcttttccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatct |
297 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |
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| T |
32248669 |
gttttgttattgaattgcactctattccttcgtgaggatttatcctacttcttgggttttggtctagt-ctcccaagatgtttattgtatttaattatct |
32248767 |
T |
|
| Q |
298 |
atcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32248768 |
atcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat-taattaggattaagatatcaagtttttcttctaatgtccatgca |
32248866 |
T |
|
| Q |
398 |
ctctaaattttgcaaagttgaacatgatgtccatc |
432 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |
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| T |
32248867 |
ctctaaattttgcaaagttgaacatgatttccatc |
32248901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 32236285 - 32236474
Alignment:
| Q |
1 |
attccatctccttctacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32236285 |
attccatctccttctacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgt |
32236384 |
T |
|
| Q |
101 |
tgaaattcaatttgtattactatcaaggtgtatcaaagatgacttctttacaaagttatagaattcaactcttttgagtttggtcttgttgttgctagtt |
200 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
32236385 |
tgaaattcaatttgtattac----------tatcaaagatgacttctttagaaagttatagaattgaactcatttgagtttggtcttgttgttgctagtt |
32236474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 38 - 425
Target Start/End: Original strand, 32254771 - 32255158
Alignment:
| Q |
38 |
accctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaatttgtattactatcaaggtgtatcaaa |
137 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
32254771 |
acccccttctctataaggacagctatgttccagctcttccttctcctcatcctaattaaatgttgaaattcaaactgtattaatatcaaggtgtatcaaa |
32254870 |
T |
|
| Q |
138 |
gatgacttctttacaaagttatagaattcaa---------------ctcttttgagtttggtcttgttgttgctagttttgttattgaattgcactcttt |
222 |
Q |
| |
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|| ||||||||| ||||||||||| || | | |||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
32254871 |
gaaaacttctttagaaagttatagatttagatgatggttagttgttttattttgagtttggtc---ttgttgcta-----gttattgaattgcactcttt |
32254962 |
T |
|
| Q |
223 |
tccttcgtgaggatttatcctacttcttgggttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgc |
322 |
Q |
| |
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| |||| |||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
32254963 |
ttcttcatgagcggttatcctacttcttgggttttggtctatcccttccaagatttttattgtatttcttta--tgtcaataaatttgttagggtgttgc |
32255060 |
T |
|
| Q |
323 |
aaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagtttttcttctaatgtccatgcactctaaattttgcaaagttgaaca |
421 |
Q |
| |
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|||| ||| ||||||||||| |||||| || || |||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
32255061 |
aaatgataggtagtgaattttgggtgtcaactta------attaggatgtcaactttttcttctgatgtccatgcactctaatatttgcaaagttgaaca |
32255154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 32236485 - 32236620
Alignment:
| Q |
253 |
gttttggtctagtccccccaagatgtttattgtatttctttatctatcaataaatttgttagtttgttgcaaattatagtagtgaatttggggtgttaat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32236485 |
gttttggtctagtccccccaagatgtttattgtatatctttctctatcaataaatttgttagtttgttgcaaattatagtagtgaattttgggtgttaat |
32236584 |
T |
|
| Q |
353 |
ctaattaggattaggatatcaagtttttcttctaat |
388 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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| T |
32236585 |
ctaattaggattatgatatcaagtttttcttctaat |
32236620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 32254693 - 32254733
Alignment:
| Q |
20 |
catgggatggaaatttccaccctcttctctataaggacaac |
60 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254693 |
catgggatggaaatttccaccctcttctctataaggacaac |
32254733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 23193914 - 23194009
Alignment:
| Q |
15 |
tacctcatgggatggaaatttccaccctcttctctataaggacaactatgttccagctcttccttctcctcatctgaattaaatgttgaaattcaa |
110 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23193914 |
taccttatgggatggaaatttccaacctcttctctataaggaaaactatgctccagctcttccttctcctcatctgaattaaatgttgaaattcaa |
23194009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 424
Target Start/End: Original strand, 23202952 - 23203089
Alignment:
| Q |
282 |
ttgtatttctttatctatcaataaatttgttagtttgttgcaaattata-gtagtgaatttggggtgttaatctaattaggattaggatatcaagttttt |
380 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| ||| ||| ||||||| || | | || ||| ||||||| ||||| | | |
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|
| T |
23202952 |
ttgtatttctttatttatcaataaatttgttaggatgttgcaaatgataggtaatgaatttaggatctcaaccta------gttaggatgtcaagctcat |
23203045 |
T |
|
| Q |
381 |
cttctaatgtccatgcactctaaattttgcaaagttgaacatga |
424 |
Q |
| |
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| ||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
23203046 |
catctaatgcccatgcactctaatttttgcaaagttgaacatga |
23203089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37027724 - 37027682
Alignment:
| Q |
18 |
ctcatgggatggaaatttccaccctcttctctataaggacaac |
60 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
37027724 |
ctcatgggatggaaattttcaccctcttctctatagggacaac |
37027682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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