View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7462_low_6 (Length: 366)
Name: NF7462_low_6
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7462_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42159410 - 42159632
Alignment:
| Q |
1 |
agtttcctataagtagaataatgtgtcgtattagagaggaaatatataatgctagctgttccttgggtttgttgctttcattgaactgaacgtgttgcta |
100 |
Q |
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| T |
42159410 |
agtttcctataagtagaagaatgtgtcgtattagagaggaaatatataatgctagttgttccttgggtttgttgctttcattgaactgaacgtgttgcta |
42159509 |
T |
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| Q |
101 |
tgtggttttgactacttggaaatttgggttaaaaaggtttaaaatggattttctc-aatcttaaccaccaacaagtacgaagatctagcttctagaaatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42159510 |
tgtggttttgactacttggaaatttgggttaaaaaggtttaaaatggattttctcaaatcttaaccaccaacaagtacgaagatctagcttctagaaatt |
42159609 |
T |
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| Q |
200 |
cattttagaaaagcaattaactt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
42159610 |
cattttagaaaagcaattaactt |
42159632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 221 - 354
Target Start/End: Original strand, 42159661 - 42159796
Alignment:
| Q |
221 |
ttttggtttactcctaagtgatatttttagtgtacatttttgtttgttt--gtttcgaatggatatttttagtatacatgtatggtaaattattattgct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42159661 |
ttttggtttactcctaagtgatatttttagtgtacatttttttttttttttgtttcgaatggatatttttagtatacatgtatggtaaattattattgct |
42159760 |
T |
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| Q |
319 |
aaaacactgtatagtaaattattaatgttgaagtat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42159761 |
aaaacactgtatagtaaattattaatgttgaagtat |
42159796 |
T |
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