View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7462_low_8 (Length: 322)

Name: NF7462_low_8
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7462_low_8
NF7462_low_8
[»] chr7 (9 HSPs)
chr7 (143-304)||(6774383-6774544)
chr7 (143-304)||(6778670-6778831)
chr7 (147-304)||(37476091-37476248)
chr7 (147-304)||(37480613-37480770)
chr7 (147-309)||(37466296-37466458)
chr7 (20-74)||(6774613-6774667)
chr7 (20-74)||(6778900-6778954)
chr7 (20-59)||(37475481-37475520)
chr7 (231-272)||(37580995-37581036)
[»] chr1 (1 HSPs)
chr1 (147-292)||(45071567-45071712)
[»] chr8 (2 HSPs)
chr8 (144-309)||(37362791-37362956)
chr8 (144-292)||(37365114-37365262)
[»] chr3 (1 HSPs)
chr3 (143-291)||(50915221-50915369)
[»] chr5 (2 HSPs)
chr5 (149-292)||(8992536-8992679)
chr5 (149-292)||(8983138-8983281)
[»] chr4 (5 HSPs)
chr4 (153-306)||(11160811-11160964)
chr4 (149-225)||(5646999-5647075)
chr4 (149-217)||(11174924-11174992)
chr4 (149-217)||(11182374-11182442)
chr4 (149-250)||(11179053-11179154)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 304
Target Start/End: Complemental strand, 6774544 - 6774383
Alignment:
Q  143 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 242  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  6774544 tttcattcattcaactgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctcc 6774445  T
Q  243 ggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6774444 ggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccaatagactcttgat 6774383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 304
Target Start/End: Complemental strand, 6778831 - 6778670
Alignment:
Q  143 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  6778831 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctcc 6778732  T
Q  243 ggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgat 304  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6778731 ggtgtcttccctttgatcatgtccgccacagactggcatgtaagatccagtagactcttgat 6778670  T

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Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 37476091 - 37476248
Alignment:
Q  147 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 246  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  37476091 attcattcaaatgcccattgattttccctgcgaacttcttcctcttcctccggagtgaaatcattcttgatattaaaagtctttcgaatttcctctggtg 37476190  T
Q  247 tcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgat 304  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37476191 tcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgat 37476248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 37480613 - 37480770
Alignment:
Q  147 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 246  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |    
T  37480613 attcattcaaatgcccattgattttccctacgaatttcttcctcttcctccgaagtgaaatcattcttgatattaaaagtctttcgaatttcctccggcg 37480712  T
Q  247 tcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgat 304  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37480713 tcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgat 37480770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 37466296 - 37466458
Alignment:
Q  147 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 246  Q
    |||||||||||||||||||  |||||   ||||| | || | |||||||| ||| ||||||||||||| || |||||  || | || |||||||| || |    
T  37466296 attcattcaaatgcccatttgttttctgcacgaattgctgcttcttcctctggactgaaatcattcttgatgttaaacatctcacgcatttcctcgggcg 37466395  T
Q  247 tcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgatgtcca 309  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  37466396 tcttccctttcatcatgtccgccgcagactggcaggtaagatccagtagactcttgatatcca 37466458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 6774667 - 6774613
Alignment:
Q  20 ctagactaatgtcatctatcaagtgaacatagtccattcaataccaagcagcatg 74  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  6774667 ctagactagtgtcatctatcaagtgaacatagtccattcactaccaagcagcatg 6774613  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 6778954 - 6778900
Alignment:
Q  20 ctagactaatgtcatctatcaagtgaacatagtccattcaataccaagcagcatg 74  Q
    |||||||| ||||||||||||||||||||||||||||||| || |||||||||||    
T  6778954 ctagactagtgtcatctatcaagtgaacatagtccattcactaacaagcagcatg 6778900  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 37475481 - 37475520
Alignment:
Q  20 ctagactaatgtcatctatcaagtgaacatagtccattca 59  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  37475481 ctagactagtgtcatctattaagtgaacatagtccattca 37475520  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 37581036 - 37580995
Alignment:
Q  231 cgaatttcctccggtgtcttccctttgatcatgtccgccaca 272  Q
    ||||| |||||||| |||||||| ||||||||||||||||||    
T  37581036 cgaatctcctccggcgtcttccccttgatcatgtccgccaca 37580995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 147 - 292
Target Start/End: Original strand, 45071567 - 45071712
Alignment:
Q  147 attcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtg 246  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||||||| || |||||||||  |||||||||||||||||    
T  45071567 attcattcaaatgcccattgattttcccagcgaacttcttcttcttccttcggagtgaaatcattcttgatgttaaaagtctttcgaatttcctccggtg 45071666  T
Q  247 tcttccctttgatcatgtccgccacatactggcaggtaagatccag 292  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  45071667 tcttccctttgatcatgtccgccacaatctggcaggtaagatccag 45071712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 309
Target Start/End: Original strand, 37362791 - 37362956
Alignment:
Q  144 ttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccg 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||||| |||||    
T  37362791 ttcattcattcaaatacccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttgatgtgaaaagtctctcgaatttgctccg 37362890  T
Q  244 gtgtcttccctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgatgtcca 309  Q
    ||||||||||||| ||||||| | |||||  || ||||||||||||||| |  |||||||| ||||    
T  37362891 gtgtcttccctttaatcatgttcaccacagtctcgcaggtaagatccagcaagctcttgatatcca 37362956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 144 - 292
Target Start/End: Complemental strand, 37365262 - 37365114
Alignment:
Q  144 ttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccg 243  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||| ||||||||| |||||    
T  37365262 ttcattcattcaaatgcccattggttttccctacgaacttcttccttttcctccggagtgaaatcattcttgatgtgaaaagtctctcgaatttgctccg 37365163  T
Q  244 gtgtcttccctttgatcatgtccgccacatactggcaggtaagatccag 292  Q
    ||||||||||||| ||||||| |||||||  || |||||||||||||||    
T  37365162 gtgtcttccctttaatcatgttcgccacagtctcgcaggtaagatccag 37365114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 143 - 291
Target Start/End: Complemental strand, 50915369 - 50915221
Alignment:
Q  143 tttcattcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctcc 242  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||  || ||||||||   |||||||||||||    
T  50915369 tttcattcattcaaatgcccattgattttcccttcgaacttcttcctcttcctgcggagtgaaatcgttctcgatgttaaaagtgtttcgaatttcctcc 50915270  T
Q  243 ggtgtcttccctttgatcatgtccgccacatactggcaggtaagatcca 291  Q
    |||||||||||||| |||||||||||||||   ||||| ||||||||||    
T  50915269 ggtgtcttccctttcatcatgtccgccacagtttggcaagtaagatcca 50915221  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 8992679 - 8992536
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtc 248  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||| ||||| |||   ||||| ||||| ||||||    
T  8992679 tcattcaaatgcccattggttttccctacgaacttcctcctcttcctctggtgagaaatcattcttaatgttaaaggtcttgcgaatctcctcaggtgtc 8992580  T
Q  249 ttccctttgatcatgtccgccacatactggcaggtaagatccag 292  Q
    ||||| ||||||||||| ||||||  |||||| |||||||||||    
T  8992579 ttccccttgatcatgtctgccacagtctggcatgtaagatccag 8992536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 8983281 - 8983138
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtc 248  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||| |||||||| || || || |||   || || ||||| |||||     
T  8983281 tcattcaaatgcccattggttttccctacgaacttcctcctcttcctcaggtgagaagtcattcttgatgttgaatgtcttgcggatctcctctggtgtt 8983182  T
Q  249 ttccctttgatcatgtccgccacatactggcaggtaagatccag 292  Q
    || || ||||||||||| || |||   |||||||||||||||||    
T  8983181 tttcccttgatcatgtctgcaacagtttggcaggtaagatccag 8983138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 306
Target Start/End: Complemental strand, 11160964 - 11160811
Alignment:
Q  153 tcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtcttcc 252  Q
    ||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| |||||||  |||| || ||||||   ||||| |||||||| ||| | |    
T  11160964 tcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtcttacgaatctcctccggcgtcctac 11160865  T
Q  253 ctttgatcatgtccgccacatactggcaggtaagatccagtagactcttgatgt 306  Q
    | ||||||||||| || |||  || ||| ||||||||||| ||||| |||||||    
T  11160864 ccttgatcatgtctgctacagtcttgcatgtaagatccagcagacttttgatgt 11160811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 5647075 - 5646999
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaag 225  Q
    |||||| || ||||||||||||||| ||||||  || |||||||||||||||| ||||||||||  ||| |||||||    
T  5647075 tcattctaaagcccattgattttccttacgaatctcctcctcttcctccggagagaaatcattcgcaatcttaaaag 5646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 11174992 - 11174924
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaat 217  Q
    ||||||||| |||||||||||||| ||||||| ||  | ||||||||| ||| || |||||||||||||    
T  11174992 tcattcaaaagcccattgattttcgctacgaattttctgctcttcctcaggactgtaatcattcttaat 11174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 11182442 - 11182374
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaat 217  Q
    ||||||||| |||||||||||||| ||||||| ||  | ||||||||| ||| || |||||||||||||    
T  11182442 tcattcaaaagcccattgattttcgctacgaattttctgctcttcctcgggactgtaatcattcttaat 11182374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 11179053 - 11179154
Alignment:
Q  149 tcattcaaatgcccattgattttccctacgaacttcttcctcttcctccggagtgaaatcattcttaatattaaaagtcgctcgaatttcctccggtgtc 248  Q
    ||||||||| |||||   |||||| | ||||||||| ||||||||||| || ||| ||||||||||||| || ||| ||   ||||| ||||| ||||||    
T  11179053 tcattcaaaagcccaactattttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctctggtgtc 11179152  T
Q  249 tt 250  Q
    ||    
T  11179153 tt 11179154  T

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