View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7462_low_9 (Length: 312)

Name: NF7462_low_9
Description: NF7462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7462_low_9
NF7462_low_9
[»] chr5 (1 HSPs)
chr5 (1-298)||(14576807-14577103)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 14577103 - 14576807
Alignment:
Q  1 ttgttttgcattgcttgagctttgcagttctatgacatgtatgagcaagcttataactatcaatttaaaaattactttgtgatgcagacttactaaatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14577103 ttgttttgcattgcttgagctttgcagttctatgacatgtatgagcaaccttataactatcaatttaaaaattactttgtgatgcagacttactaaatct 14577004  T
Q  101 catatggaatatggacattcaatcgtgcacttaacaacaannnnnnncctctcattcttcttaaggaaaacattcttcatatattccaaaatatattctt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14577003 catatggaatatggacactcaatcgtgcacttaacaacaatttttttcctctcattcttcttaaggaaaacattcttcatatattccaaaatatattctt 14576904  T
Q  201 tcatagatgttttaactaactcaacattttcaaatatttgtcctacatgatacctaacttgctcatcattttcggacaacttaaacttacgaaaattt 298  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14576903 tcatagatg-tttaactaactcaacattttcaaatatttttcctacatgatacctaacttgctcatcattttcggacaacttaaacttacgaaaattt 14576807  T

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