View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_high_11 (Length: 297)
Name: NF7463_high_11
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_high_11 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 154 - 332
Alignment:
| Q |
1 |
gcgtcctcatcaacaacctctctgaatcactccgcaacggcctcgcacaacgccgtccatggacagaactcgtcgaccgctccgccttcagcaaacctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154 |
gcgtcctcatcaacaacctctctgaatcactccgcaacggcctcgcacaacgccgtccatggacagaactcgtcgaccgctccgccttcagcaaacctga |
253 |
T |
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| Q |
101 |
atccttctccgatgccaccctccgtgtccgcaaaaactactcctacttccgtgtcaactactacgccgtcgtcgccgga |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
254 |
atccttctccgatgccaccctccgtgtccgcaaaaactactcctacttccgtgtcaactactacgccgtcgttgccgga |
332 |
T |
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Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3898905 - 3899083
Alignment:
| Q |
1 |
gcgtcctcatcaacaacctctctgaatcactccgcaacggcctcgcacaacgccgtccatggacagaactcgtcgaccgctccgccttcagcaaacctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898905 |
gcgtcctcatcaacaacctctctgaatcactccgcaacggcctcgcacaacgccgtccatggacagaactcgtcgaccgctccgccttcagcaaacctga |
3899004 |
T |
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| Q |
101 |
atccttctccgatgccaccctccgtgtccgcaaaaactactcctacttccgtgtcaactactacgccgtcgtcgccgga |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3899005 |
atccttctccgatgccaccctccgtgtccgcaaaaactactcctacttccgtgtcaactactacgccgtcgttgccgga |
3899083 |
T |
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