View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_high_16 (Length: 267)
Name: NF7463_high_16
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 25255789 - 25255959
Alignment:
| Q |
1 |
tatttggataaacaacttattttgtagctaattctataatacaagataaaataaagccaaactctttccctataagctgttttcatctgttatcctagag |
100 |
Q |
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| T |
25255789 |
tatttggataaacaacttattttgtagctaattctataatacaagataaaataaagccaaactctttccctataagctgttttcatctgttatcctagag |
25255888 |
T |
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| Q |
101 |
cacttaaggaaataagctgaaaaacctagtctagaccaggtaaaaattaaatgtgcatggtttgagagagtattataacttactg |
185 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255889 |
cacttaaggaaataag--------------ctagaccaggtaaaaattaaatgtgcatggtttgagagagtattataacttactg |
25255959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 41644515 - 41644463
Alignment:
| Q |
71 |
tataagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaa |
123 |
Q |
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|||||||||||||||| | |||| ||||| ||||||||||||||||||||| |
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| T |
41644515 |
tataagctgttttcataagctatcgtagagatcttaaggaaataagctgaaaa |
41644463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 1275148 - 1275203
Alignment:
| Q |
70 |
ctataagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaaac |
125 |
Q |
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| T |
1275148 |
ctataagctgttttcatatgttatcctggagagcttatggaaataagctgaaaaac |
1275203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 425941 - 425907
Alignment:
| Q |
29 |
taattctataatacaagataaaataaagccaaact |
63 |
Q |
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| T |
425941 |
taattctataatacaagataaaataaagtcaaact |
425907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 36638750 - 36638800
Alignment:
| Q |
74 |
aagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaaa |
124 |
Q |
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||||||||||||| |||||||||||| |||| ||||||||||||||||| |
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| T |
36638750 |
aagctgttttcataagttatcctagagagcttatggaaataagctgaaaaa |
36638800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 29601079 - 29601026
Alignment:
| Q |
70 |
ctataagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaa |
123 |
Q |
| |
|
|||||| |||||||||| || |||||||||| ||||| | |||||||||||||| |
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| T |
29601079 |
ctataatctgttttcatatgctatcctagagaacttatgaaaataagctgaaaa |
29601026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 29316846 - 29316793
Alignment:
| Q |
70 |
ctataagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaa |
123 |
Q |
| |
|
|||||||||||||||||| | |||| | ||| ||||| |||||||||||||||| |
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|
| T |
29316846 |
ctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaa |
29316793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 15558217 - 15558269
Alignment:
| Q |
71 |
tataagctgttttcatctgttatcctagagcacttaaggaaataagctgaaaa |
123 |
Q |
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|||||||||||||||| | |||||||||| ||||| ||||||||||||||| |
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| T |
15558217 |
tataagctgttttcataagatatcctagagaacttatagaaataagctgaaaa |
15558269 |
T |
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