View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_high_20 (Length: 249)
Name: NF7463_high_20
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 49256232 - 49256444
Alignment:
| Q |
17 |
acatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaaagtgatgctatttctttgtttgtgtttggtttttcttttcgttgt |
116 |
Q |
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| T |
49256232 |
acatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaaagtgatgctatttctttgtttgtgtttggtttttcttttcgttgt |
49256331 |
T |
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| Q |
117 |
gttattcagtgcaagagtttcaaatgcattaggagctggatgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggct |
216 |
Q |
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| T |
49256332 |
gtcattcagtgcaagagtttcaaatgcattaggagctggatgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggct |
49256431 |
T |
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| Q |
217 |
atattggtgagtt |
229 |
Q |
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| T |
49256432 |
atattggtgagtt |
49256444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 49269303 - 49269402
Alignment:
| Q |
130 |
agagtttcaaatgcattaggagctggatgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggctatattggtgagtt |
229 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||| ||||| | | ||||||||||||||||| |||||||||| |
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| T |
49269303 |
agagtttcaaatgcattaggaggtggatgtccacaagcagcgcgattgtctgtctttgcttctatgaccgttgcagtttctgaggctattttggtgagtt |
49269402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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