View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7463_high_21 (Length: 241)

Name: NF7463_high_21

Description: NF7463

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7463_high_21

[»] chr1 (2 HSPs)

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 212; E-Value: 1e-116

Query Start/End: Original strand, 18 - 241

Target Start/End: Complemental strand, 12414547 - 12414324

Alignment:

Q	18	aagtcacacattaaataatgatgatatggcctgaacaatgattattagtggggtacaatcctcaccccaagagctagcttgtggggttgatttagactca	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12414547	aagtcacacattaaataatgatgatatggcctgaacaatgattattagtgtggtacaatcctcaccccaagagctagcttatggggttgatttagactca	12414448	T

Q	118	aaacccttgaaagagatgggcgacgagagggatcctgaaagagcaaacgaagatgagccctaatcaatgggctgatgagagagagaacattaatgggctg	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12414447	aaacccttgaaagagatgggcgatgagagggatcctgaaagagcaaacgaagatgagccctaatcaatgggctgatgagagagagaacattaatgggctg	12414348	T

Q	218	acaccgcatcttgatccaaagttt	241	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12414347	acaccgcatcttgatccaaagttt	12414324	T

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Target: chr1; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 167 - 237

Target Start/End: Complemental strand, 12432719 - 12432649

Alignment:

Q	167	aagatgagccctaatcaatgggctgatgagagagagaacattaatgggctgacaccgcatcttgatccaaa	237	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12432719	aagatgaactctaattaatggactgaagtgagagagcacaaaaatgggctgacaccacatcttgatccaaa	12432649	T

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